gi_545778205_gb_U000_254

cmsearch-Rfam

Family :

sok

Id:

RF01794

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

GO:0003729 mRNA binding

Description:

not description

Score:

29.1

E-value:

0.00045

From sequence:

1269424

To sequence:

1269273

Alignments:

                                   vv          vvv                       vvv          vv                         NC
                               :<<-<<<----<<<<<<<<<<_._________________>>>>>>>>>>---->>>>>----.........--------- CS
               RF01794       1 GGGUGCUUGAGucuuUCUGccU.cAgGCAUuaagucgaaaggCAGAaagaaAAAAGCCCCagu.........aGauAuUuu 71     
                               GGG        :CUUU+U CCU   GGCAUU    +   +GG   AAAG:+AAA +CCCC G           G       
  gi_545778205_gb_U000 1269424 GGG--------GCUUUAUCCCUgGUGGCAUUGG--UUGCUGG---AAAGAGAAA-ACCCCCGCacguugaga-G------- 1269366
                               ***........9999998888844455888844..3344455...788888888.66666666577777664.2....... PP

                                                     v      v                       v     v                      NC
                               ........--------------<<<<--<<<<-<<<<_________>>>>->>>>->>>>::::::::::::::::::::: CS
               RF01794      72 ........UuauuAUcAAuacGAGGCcuacccucauGcCUagaCAACaugAggguAGCCUCUUACcugccgAAAgGCAAgG 144    
                                       U A +A   A + G GGC+ A :CU::::CC  +ACAA::::AG: UAGCC C  A + +    A+  CAA  
  gi_545778205_gb_U000 1269365 guacaaccUGACAACAGAACGGGGGCU-AAUCUUGAACCAGAACAAUUCAAGAAUAGCCGCAAAAUGUUGUCAUUACAACA 1269286
                               333344435666666666666777775.667779*********************************************** PP

                                              NC
                               :::::::::::::: CS
               RF01794     145 AggAGGcuAaaAUG 158    
                               AGG GGCUA+ AUG
  gi_545778205_gb_U000 1269285 AGGCGGCUAU-AUG 1269273
                               ********97.*** PP

>>

RNAfold
>gi_545778205_gb_U000_254
GUCAUAUAGCCGCCUUGUUGUAAUGACAACAUUUUGCGGCUAUUCUUGAA
UUGUUCUGGUUCAAGAUUAGCCCCCGUUCUGUUGUCAGGUUGUACCUCUC
AACGUGCGGGGGUUUUCUCUUUCCAGCAACCAAUGCCACCAGGGAUAAAG
CCCCCGC
.(((.((((((((..((((((....))))))....))))))))...)))...(((((((....(((..(((((((((..(((((..((((...))))..))))).))))))))).)))....)))).)))...........(((......))).... (-58.20)

Length sequence

: 157

Length match:

150