gi_545778205_gb_U000_255

cmsearch-Rfam

Family :

sok

Id:

RF01794

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

GO:0003729 mRNA binding

Description:

not description

Score:

28.3

E-value:

0.0007

From sequence:

1269959

To sequence:

1269808

Alignments:

                                   vv          vvv                       vvv          vv                         NC
                               :<<-<<<----<<<<<<<<<<_._________________>>>>>>>>>>---->>>>>----.........--------- CS
               RF01794       1 GGGUGCUUGAGucuuUCUGccU.cAgGCAUuaagucgaaaggCAGAaagaaAAAAGCCCCagu.........aGauAuUuu 71     
                               GGG        :CUUU+U CCU   GGCAUU    +   +GG   AAAG:+AAA +CCCC G           G+ A+   
  gi_545778205_gb_U000 1269959 GGG--------GCUUUAUCCCUgGUGGCAUUGG--UUGCUGG---AAAGAGAAA-ACCCCCGCacguugagaGGUAAAACC 1269893
                               ***........9*99998888844455888844..3344455...788888888.66666666699988886344444444 PP

                                             v      v                       v     v                              NC
                               --------------<<<<--<<<<-<<<<_________>>>>->>>>->>>>::::::::::::::::::::::::::::: CS
               RF01794      72 UuauuAUcAAuacGAGGCcuacccucauGcCUagaCAACaugAggguAGCCUCUUACcugccgAAAgGCAAgGAggAGGcu 152    
                               U A +A   A + G GGC+ A :CU:::: C AGACA ::::AG: UAGCC C  A + +    A+  CAA  AGG GGCU
  gi_545778205_gb_U000 1269892 UGACAACAGAACGGGGGCU-AAUCUUGAAACCAGACACUUCAAGAAUAGCCGCAAAAUGUUGUCAUUACAACAAGGCGGCU 1269813
                               6666666666777778885.667779******************************************************* PP

                                      NC
                               :::::: CS
               RF01794     153 AaaAUG 158    
                               A+ AUG
  gi_545778205_gb_U000 1269812 AU-AUG 1269808
                               97.*** PP

RNAfold
>gi_545778205_gb_U000_255
GUCAUAUAGCCGCCUUGUUGUAAUGACAACAUUUUGCGGCUAUUCUUGAA
GUGUCUGGUUUCAAGAUUAGCCCCCGUUCUGUUGUCAGGUUUUACCUCUC
AACGUGCGGGGGUUUUCUCUUUCCAGCAACCAAUGCCACCAGGGAUAAAG
CCCCCGC
.(((.((((((((..((((((....))))))....))))))))...)))..((.((((.....(((..(((((((((..(((((..((((...))))..))))).))))))))).)))....)))))).............(((......))).... (-57.10)

Length sequence

: 157

Length match:

150