gi_545778205_gb_U000_256

cmsearch-Rfam

Family :

sok

Id:

RF01794

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

GO:0003729 mRNA binding

Description:

not description

Score:

31.3

E-value:

0.00012

From sequence:

1270494

To sequence:

1270343

Alignments:

                                   vv          vvv                       vvv          vv                         NC
                               :<<-<<<----<<<<<<<<<<_._________________>>>>>>>>>>---->>>>>----.........--------- CS
               RF01794       1 GGGUGCUUGAGucuuUCUGccU.cAgGCAUuaagucgaaaggCAGAaagaaAAAAGCCCCagu.........aGauAuUuu 71     
                               GGG        :CUUU+U CCU   GGCAUU    +   +GG   AAAG:+AAA +CCCC G           G UA+   
  gi_545778205_gb_U000 1270494 GGG--------GCUUUAUCCCUgGUGGCAUUGG--UUGCUGG---AAAGAGAAA-ACCCCCGCacguugaga-GGUAAAAC 1270429
                               ***........9*99998888844455888844..3344455...788888888.66666666699998885.44444444 PP

                                              v      v                       v     v                             NC
                               ----------.----<<<<--<<<<-<<<<_________>>>>->>>>->>>>:::::::::::::::::::::::::::: CS
               RF01794      72 UuauuAUcAA.uacGAGGCcuacccucauGcCUagaCAACaugAggguAGCCUCUUACcugccgAAAgGCAAgGAggAGGc 151    
                                U ++A+CAA  + G GGC UA :CU:::: C AGACA ::::AG: UAGCC C  A + +    A+  CAA  AGG GGC
  gi_545778205_gb_U000 1270428 CUGACAACAAaACGGGGGC-UAAUCUUGAAACCAGACACUUCAAGAAUAGCCGCAAAAUGUUGUCAUUACAACAAGGCGGC 1270349
                               4555555555155556666.5677779****************************************************** PP

                                       NC
                               ::::::: CS
               RF01794     152 uAaaAUG 158    
                               UA+ AUG
  gi_545778205_gb_U000 1270348 UAU-AUG 1270343
                               *97.*** PP

>>

RNAfold
>gi_545778205_gb_U000_256
GUCAUAUAGCCGCCUUGUUGUAAUGACAACAUUUUGCGGCUAUUCUUGAA
GUGUCUGGUUUCAAGAUUAGCCCCCGUUUUGUUGUCAGGUUUUACCUCUC
AACGUGCGGGGGUUUUCUCUUUCCAGCAACCAAUGCCACCAGGGAUAAAG
CCCCGCA
.(((.((((((((..((((((....))))))....))))))))...)))..((.((((.....(((..(((((((((..(((((..((((...))))..))))).))))))))).)))....)))))).............(((......))).... (-57.10)

Length sequence

: 157

Length match:

150