gi_545778205_gb_U000_257

cmsearch-Rfam

Family :

sok

Id:

RF01794

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

GO:0003729 mRNA binding

Description:

not description

Score:

109.0

E-value:

2.4e-24

From sequence:

1492217

To sequence:

1492066

Alignments:

                                          v       v                     v       v                                NC
                               :<<-<<<----<<<<<<<<<<_._________________>>>>>>>>>>---->>>>>---------------------- CS
               RF01794       1 GGGUGCUUGAGucuuUCUGccU.cAgGCAUuaagucgaaaggCAGAaagaaAAAAGCCCCaguaGauAuUuuUuauuAUcA 80     
                               GGGUGC:UGAG CUUUCUG :U CAGGC  UAA +CG +A: CAGAAAG  +AA:GCCCC++  GAUAU    U+ UAUCA
  gi_545778205_gb_U000 1492217 GGGUGCCUGAGACUUUCUGUUUuCAGGC--UAA-CCGGGAAUCAGAAAGACGAAGGCCCCGACCGAUAU----UUCUAUCA 1492144
                               **********************899999..556.99*******************************99....8899***9 PP

                                           v                        v                                           NC
                               -----<<<<--<<<<-<<<<_________>>>>.->>>>->>>>:::::::::::::::::::::.:::::::::::::: CS
               RF01794      81 AuacGAGGCcuacccucauGcCUagaCAACaug.AggguAGCCUCUUACcugccgAAAgGCAAgG.AggAGGcuAaaAUG 158    
                               A +CGAGGCC+A :: ::::CCUAG CAA:::: A:: UAGCCUCUUACC GCC+   GGCAAGG  ++AGGCUA++A+G
  gi_545778205_gb_U000 1492143 A-CCGAGGCCAACGAAUGAACCUAG-CAAUUCAgAUCUUAGCCUCUUACCCGCCAUCCGGCAAGGaGAAAGGCUAUGAAG 1492066
                               6.*******9999999*********.*******777777**************************9999*********** PP

>>

RNAfold
>gi_545778205_gb_U000_257
UGCUUCAUAGCCUUUCUCCUUGCCGGAUGGCGGGUAAGAGGCUAAGAUCU
GAAUUGCUAGGUUCAUUCGUUGGCCUCGGUUGAUAGAAAUAUCGGUCGGG
GCCUUCGUCUUUCUGAUUCCCGGUUAGCCUGAAAACAGAAAGUCUCAGGC
ACCCGCA
....((.((((((((..(((.(((....))))))..)))))))).))..((((((....))))))..((..((((((((((((((....))))))))))))))..)).............(((...((((((..((.....)).))))))..))).. (-57.30)

Length sequence

: 157

Length match:

150