gi_545778205_gb_U000_258

cmsearch-Rfam

Family :

sok

Id:

RF01794

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

GO:0003729 mRNA binding

Description:

not description

Score:

123.5

E-value:

4.9e-28

From sequence:

17053

To sequence:

16901

Alignments:

                                                                                                                   NC
                             :<<-<<<----<<<<<<<<<<__________________>>>>>>>>>>---->>>>>--------------------------- CS
               RF01794     1 GGGUGCUUGAGucuuUCUGccUcAgGCAUuaagucgaaaggCAGAaagaaAAAAGCCCCaguaGauAuUuuUuauuAUcAAuacG 85   
                             GGGUGCUUGAG:CU:UCUG:CUCAGGCAUUA  ++GAA G:CAGA:AG:+AAAAGCCCC++ +GAUAUUU  UA +AUCAA++CG
  gi_545778205_gb_U000 17053 GGGUGCUUGAGGCUGUCUGUCUCAGGCAUUAG-CUGAACGGCAGAUAGAGAAAAGCCCCGAGUGAUAUUU--UACCAUCAACCCG 16972
                             ******************************99.**********************************977..************* PP

                                    v v                   v v                                           NC
                             <<<<--<<<<-<<<<_________>>>>->>>>->>>>:::::::::::::::::::::.:::::::::::::: CS
               RF01794    86 AGGCcuacccucauGcCUagaCAACaugAggguAGCCUCUUACcugccgAAAgGCAAgG.AggAGGcuAaaAUG 158  
                             AGGCCU: :   AUG CU +ACA CAU   : : GCCUCUUAC+  CCG AAGG  A G AG+AG  +  AAUG
  gi_545778205_gb_U000 16971 AGGCCUCCUA-UAUG-CUGAACA-CAUGUAGAGUGCCUCUUACUGACCGUAAGGUCAAGgAGAAGAGAGCAAUG 16901
                             ****766555.7999.*******.9998777779******************7766666499999999999*** PP

>>

RNAfold
>gi_545778205_gb_U000_258
UUCAUUGCUCUCUUCUCCUUGACCUUACGGUCAGUAAGAGGCACUCUACA
UGUGUUCAGCAUAUAGGAGGCCUCGGGUUGAUGGUAAAAUAUCACUCGGG
GCUUUUCUCUAUCUGCCGUUCAGCUAAUGCCUGAGACAGACAGCCUCAAG
CACCCGCC
.....(((.(((((....((((((....)))))).)))))))).........((..(.(((.((((((((((((((((.((((......))))))))))))))))...)))).))).)..))((...(((.((((.(.....).)))).)))...)). (-50.30)

Length sequence

: 158

Length match:

151