gi_545778205_gb_U000_259

cmsearch-Rfam

Family :

sok

Id:

RF01794

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

GO:0003729 mRNA binding

Description:

not description

Score:

101.3

E-value:

2.1e-22

From sequence:

2887455

To sequence:

2887300

Alignments:

                                                   v                   v                                         NC
                               :<<-<<<----<<<<<<<<<<_._________________>>>>>>>>>>---->>>>>---------------------- CS
               RF01794       1 GGGUGCUUGAGucuuUCUGccU.cAgGCAUuaagucgaaaggCAGAaagaaAAAAGCCCCaguaGauAuUuuUuauuAUcA 80     
                               GGGUGCUUGAG:C::UCUG:   +A+GCAUU   + + ++ :CAGA::G: AAAAGCCCCAG  GAUAU    U+ UAUCA
  gi_545778205_gb_U000 2887455 GGGUGCUUGAGGCUGUCUGGCGuUAAGCAUUCG-CGAGGUUCCAGAUGGACAAAAGCCCCAGGCGAUAU----UUCUAUCA 2887380
                               ********************987********98.999999***************************99....889***** PP

                                                                                                                NC
                               -----<<<<--<<<<-<<<<_________>>>>->>>>.->>>>:::::::::::::::::::::.:::::::::::::: CS
               RF01794      81 AuacGAGGCcuacccucauGcCUagaCAACaugAgggu.AGCCUCUUACcugccgAAAgGCAAgG.AggAGGcuAaaAUG 158    
                               A+++GAG:CC+ C::UC:::CC A+ACAA:::GA::G  AG:CUCUU  +UGC G  AGGCAAG  A G G +UA+ A  
  gi_545778205_gb_U000 2887379 ACCUGAGGCCAGCGUUCGAACCCAAACAAUUCGAAUGUuAGUCUCUUCUUUGCAGGGAGGCAAGAcAUGUGUAUAUCACU 2887300
                               ******************************************************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_259
AGUGAUAUACACAUGUCUUGCCUCCCUGCAAAGAAGAGACUAACAUUCGA
AUUGUUUGGGUUCGAACGCUGGCCUCAGGUUGAUAGAAAUAUCGCCUGGG
GCUUUUGUCCAUCUGGAACCUCGCGAAUGCUUAACGCCAGACAGCCUCAA
GCACCCG
.(((.........(((((.((......(((.....(((.......((((((((.....))))))))....((((((((((.((((....))))))))))))))....(((....)))..))).....))).....)).)))))........)))... (-44.00)

Length sequence

: 157

Length match:

154