gi_545778205_gb_U000_260

cmsearch-Rfam

Family :

sok

Id:

RF01794

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

GO:0003729 mRNA binding

Description:

not description

Score:

65.7

E-value:

2.3e-13

From sequence:

3722154

To sequence:

3722030

Alignments:

                                          v                                    v                                 NC
                               :<<-<<<----<<<<<<<<<<__________________>>>>>>>>>>---->>>>>----------------------- CS
               RF01794       1 GGGUGCUUGAGucuuUCUGccUcAgGCAUuaagucgaaaggCAGAaagaaAAAAGCCCCaguaGauAuUuuUuauuAUcAA 81     
                               GGGUGCUUGAG CU:U:UG:CUCAGG AUU A +CGAAAG:CA:A:AG +AAAAGCCCCA  +GA  +     +++AUCAA
  gi_545778205_gb_U000 3722154 GGGUGCUUGAGACUGUUUGUCUCAGGUAUUCA-CCGAAAGGCAGACAGAGAAAAGCCCCACCUGACUA-----UAAAUCAA 3722080
                               ********************************.*****************************999775.....55566555 PP

                                                                         NC
                               ~~~~~~::::::::::::::::::::::::::::::::::: CS
               RF01794      82 *[42]*CUUACcugccgAAAgGCAAgGAggAGGcuAaaAUG 158    
                                     C  A   +  GA AG  AA  A GAGGC+ A A G
  gi_545778205_gb_U000 3722079 *[15]*CAAAAAGUUGGACAGUUAAACACGAGGCAUAUAGG 3722030
                               ...8..666666666666666777776************** PP

>>

RNAfold
>gi_545778205_gb_U000_260
GAAUAUCGGAAUCAGACCUAUAUGCCUCGUGUUUAACUGUCCAACUUUUU
GGGGUCAGUACAAACUUUGAUUUAUAGUCAGGUGGGGCUUUUCUCUGUCU
GCCUUUCGGUGAAUACCUGAGACAAACAGUCUCAAGCACCCGUGGCUAUU
CUAGCUUA
...((((((((.(((((......((((((.((((.((((.((..(.....).)).))))..))))(((((((...)))))))))))))........)))))..))))))))....(.((((((.....)))))).).......(((((...))))).. (-36.90)

Length sequence

: 158

Length match:

123