gi_545778205_gb_U000_261

cmsearch-Rfam

Family :

sok

Id:

RF01794

Type:

Gene; antitoxin;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

GO:0003729 mRNA binding

Description:

not description

Score:

73.5

E-value:

2.3e-15

From sequence:

607689

To sequence:

607838

Alignments:

                                    v             v                   v             v                             NC
                              :<<-<<<----<<<<<<<<<<_._________________>>>>>>>>>>---->>>>>-----------------------. CS
               RF01794      1 GGGUGCUUGAGucuuUCUGccU.cAgGCAUuaagucgaaaggCAGAaagaaAAAAGCCCCaguaGauAuUuuUuauuAUcAA. 81    
                              GGGUGC+UGA :CUUUC::: U CAGG  U  + ++GA+  :::GAAAG: +AA GCCCCAG AGAUAU    U+ UAUCAA 
  gi_545778205_gb_U000 607689 GGGUGCCUGAAGCUUUCCGGUUuCAGGUUUACU-CUGAGGUCUGGAAAGAUGAA-GCCCCAGGAGAUAU----UUCUAUCAAc 607765
                              **********************66666666666.********************.************99....6677777776 PP

                                           v                    v                                             NC
                              ----<<<<--<<<<-.<<<<_________>>>>->>>>.->>>>::::::::::::::::::::::::::::::::::: CS
               RF01794     82 uacGAGGCcuacccu.cauGcCUagaCAACaugAgggu.AGCCUCUUACcugccgAAAgGCAAgGAggAGGcuAaaAUG 158   
                              +++G:G:C+ :C: U CA::CC  +ACAA::UG  :G: AG:C:CUU  + GC    AGGCAA   +      AA AUG
  gi_545778205_gb_U000 607766 CCUGGGGCUGCCACUcCAAACCCGAACAAUUUGGAUGGuAGUCCCUUCUUCGCAUGGAGGCAAUAUA------AACAUG 607838
                              78******99999888*****************999999***********************87644......446*** PP

>>

RNAfold
>gi_545778205_gb_U000_261
GGCGGGUGCCUGAAGCUUUCCGGUUUCAGGUUUACUCUGAGGUCUGGAAA
GAUGAAGCCCCAGGAGAUAUUUCUAUCAACCCUGGGGCUGCCACUCCAAA
CCCGAACAAUUUGGAUGGUAGUCCCUUCUUCGCAUGGAGGCAAUAUAAAC
AUGCUGA
(((....))).(((((((((((((((((((.....))))))).)))))))).....((((((((.((((....))))...))))))))(((((.((((((.........))))))))))).......))))(((((.............)))))... (-56.50)

Length sequence

: 157

Length match:

148