gi_545778205_gb_U000_262

cmsearch-Rfam

Family :

SpF19_sRNA

Id:

RF02430

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

31.8

E-value:

0.00089

From sequence:

3905719

To sequence:

3905628

Alignments:

                                   v                v    v                            v       v                  NC
                               (((((((,,,,.,,,,,<<<<<____>>>>>,,<<<<<<<<<<<<<<--<<<<<<<<~~~~~>>-->>>>>->-->>>>>> CS
               RF02430       1 aaauaaaAgGA.UGUUAuCgCcUuaAgGcGaGCagGaaCCuauuuaaaugcauCggu*[7]*acGUcGaugUcUUuuaagu 82     
                                :A +AAAGGA UGUUA:CGC+ UAA GCG:GCA::A:C::A:::AAAU :: :G U     A GUC: ::   UUU:::U
  gi_545778205_gb_U000 3905719 UGAGUAAAGGAuUGUUACCGCACUAA-GCGGGCAAAACCUGAAAAAAAUUGCUUGAU*[2]*ACGUCAGGCCG-UUUUUUU 3905644
                               ****9999998369*******98877.********9999999999999988888843..4..45688888865.6777889 PP

                                         v       NC
                               >>>>>>>>))))))):: CS
               RF02430      83 aGGuuCcuuuuauuuuA 99     
                               ::G:U::UUU  U:  A
  gi_545778205_gb_U000 3905643 CAGGUUUUUU-UUUGGA 3905628
                               9999986655.7999** PP

RNAfold
>gi_545778205_gb_U000_262
AACUCCAAAAAAAAACCUGAAAAAAACGGCCUGACGUGAAUCAAGCAAUU
UUUUUCAGGUUUUGCCCGCUUAGUGCGGUAACAAUCCUUUACUCAGUAA
...........(((((((((((((((..((.(((......))).))..)))))))))))))))..((((.....))))..................... (-27.40)

Length sequence

: 99

Length match:

90