gi_545778205_gb_U000_264

cmsearch-Rfam

Family :

sR17

Id:

RF01144

Type:

Gene; snRNA; snoRNA; CD-box;

Taxonomy:

Eukaryota; Archaea;

Ontology:

GO:0006396 RNA processingRF01144

Description:

not description

Score:

19.0

E-value:

0.0063

From sequence:

13876

To sequence:

13908

Alignments:

                             ::::::::::::::::::::::::::::::::: CS
               RF01144    12 aaGcGAaCuGCucuGAuAAGUGAUGAcaaGGuC 44   
                             ++G +AaCuGCucuGA+A GUGA GAcaa G+C
  gi_545778205_gb_U000 13876 CUGGAAACUGCUCUGAAAGGUGAAGACAAAGCC 13908
                             457789**********************99887 PP



Internal HMM-only pipeline statistics summary: (run for model(s) with zero basepairs)
--------------------------------------------------------------------------------------
Query model(s):                                          1  (55 consensus positions)
Target sequences:                                        1  (9283304 residues searched)
Windows passing local HMM SSV      filter:            2742  (0.0413); expected (0.02)
Windows passing local HMM MSV bias filter:            1887  (0.02832); expected (0.02)
Windows passing local HMM Viterbi  filter:              93  (0.001382); expected (0.001)
Windows passing local HMM Forward  filter:               6  (0.0001028); expected (1e-05)
Total HMM hits reported:                                 1  (3.555e-06)

# CPU time: 0.43u 0.00s 00:00:00.43 Elapsed: 00:00:00.12
//

RNAfold
>gi_545778205_gb_U000_264
GCUGACUGCACUGGAAACUGCUCUGAAAGGUGAAGACAAAGCCGCUAUCG
AAGC
(((..((.(((((((......)))....)))).))....))).(((.....))) ( -5.90)

Length sequence

: 54

Length match:

31