gi_545778205_gb_U000_265

cmsearch-Rfam

Family :

sraA

Id:

RF02029

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

106.4

E-value:

2.3e-18

From sequence:

458816

To sequence:

458721

Alignments:

                                                                                                                  NC
                              :::::::<-<<<---<<<<<_______>>>>>->>>->-----------------------<<<<<<<<<<<___>>>>>>>> CS
               RF02029      1 AuGUaauUgAGUAUAUggGGAUGuaUcCCccAcAUUCAACGacaagaaUaaagGAAAAAuaAAAgGGGgGauaAAauCcCCCc 83    
                              AUGUA  U+AGUAUAUGGGGAUGU+UCCCCCACAUUCAACG C+AGAAUA AGGAAAAAU+AAAGGGG:GAUAAAAUC:CCCC
  gi_545778205_gb_U000 458816 AUGUACGUCAGUAUAUGGGGAUGUUUCCCCCACAUUCAACGCCGAGAAUAGAGGAAAAAUUAAAGGGGAGAUAAAAUCCCCCC 458734
                              *********************************************************************************** PP

                                            NC
                              >>>:::.:::::: CS
               RF02029     84 UUUUua.uUaAcU 95    
                              UUUUU  UUAACU
  gi_545778205_gb_U000 458733 UUUUUGgUUAACU 458721
                              *****66****** PP

RNAfold
>gi_545778205_gb_U000_265
GUUAACCAAAAAGGGGGGAUUUUAUCUCCCCUUUAAUUUUUCCUCUAUUC
UCGGCGUUGAAUGUGGGGGAAACAUCCCCAUAUACUGACGUACAU
.........(((((((((((...)))))))))))...................((((((.(((((((((.....))))))))).).))))).... (-31.30)

Length sequence

: 95

Length match:

94