gi_545778205_gb_U000_266

cmsearch-Rfam

Family :

SraB

Id:

RF00077

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screen [1]. This ncRNA was
found to be expressed only in stationary phase [1]. The function of this RNA is
unknown.

Score:

210.6

E-value:

8e-46

From sequence:

1146589

To sequence:

1146757

Alignments:

                                                                                                                 NC
                               :::::::::::::::::<<<<_______________>>>>,,,,,,,,,,,,,,,,,,,,<<<<<<---<<<-<<<<<<__ CS
               RF00077       1 uaGGCAUAUUUUUUUCCcuCaGAUAUAGCGUAuUGAuGagAGCCAuuUUAAACUAUGCgCuuCGuuuUgCaggcuggucaU 81     
                               UAGGCAUAUUUUUUUCC:UCAGAUAUAGCGUAUUGAUGA:AGCCAUUUUAAACUAUGCGCUUCGUUUUGCAGG:UG:U:+U
  gi_545778205_gb_U000 1146589 UAGGCAUAUUUUUUUCCAUCAGAUAUAGCGUAUUGAUGAUAGCCAUUUUAAACUAUGCGCUUCGUUUUGCAGGUUGAUGUU 1146669
                               ********************************************************************************* PP

                                                                                                                 NC
                               ___>>>>>>-->>>>>>>>>,,,,,,,,,<<<<--<<<<_____>>>>-->>>>,,,,<<<<<<<<-<<___>>->>>>>> CS
               RF00077      82 uuUgaccaguacuGaaCGaaAAUAAggCuguaaCCCGCaAUGUGuGCGAAuuauUGGCaaaaGGCaACCgCAGGCuGCCuu 162    
                               U U:A:CA:+ACUGAACGAAAAUAA+GC+GUAACCCGCAAUGUGUGCGAAUUAUUGGCAAAAGGCAACC+CAGGCUGCCUU
  gi_545778205_gb_U000 1146670 UGUUAUCAGCACUGAACGAAAAUAAAGCAGUAACCCGCAAUGUGUGCGAAUUAUUGGCAAAAGGCAACCACAGGCUGCCUU 1146750
                               ********************************************************************************* PP

                                       NC
                               >>::::: CS
               RF00077     163 uuUcUuu 169    
                               UUUCUUU
  gi_545778205_gb_U000 1146751 UUUCUUU 1146757
                               ******* PP

RNAfold
>gi_545778205_gb_U000_266
AGGCAUAUUUUUUUCCAUCAGAUAUAGCGUAUUGAUGAUAGCCAUUUUAA
ACUAUGCGCUUCGUUUUGCAGGUUGAUGUUUGUUAUCAGCACUGAACGAA
AAUAAAGCAGUAACCCGCAAUGUGUGCGAAUUAUUGGCAAAAGGCAACCA
CAGGCUGCCUUUUUCUUU
..((...........((((((.(((...)))))))))...(((((........))).))((((((...((((((((((.....))))))).))))))))).......((((((..((((.....))))..))))))))((((((((.((...)).))))))))..... (-41.80)

Length sequence

: 168

Length match:

167