gi_545778205_gb_U000_267

cmsearch-Rfam

Family :

SraC_RyeA

Id:

RF00101

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screens [1-2]. The function of
this RNA is unknown. This RNA overlaps RFAM:RF00111 on the opposite strand suggesting that the
two may act in a concerted manner.

Score:

174.2

E-value:

6.3e-42

From sequence:

1923100

To sequence:

1923244

Alignments:

                                                 v           v                                                   NC
                               :::::::::::<<<<<<<<<<_______>>>>>>>>>>,,,,,,,<<<<<<<<______>>>>>>>>,,<<_________> CS
               RF00101       1 AauUAAAAAaAGaCCGaauacGAUUCCUguauuCGGuCuAGGGAAauGGCuCuUGGGAgaGaGCCguGCGCUAAAAGUUGG 81     
                               A++UAAAAA+AGACCGAA ACGAUUCCUGU UUCGGUC+AGGGAAAUGGCUCUUGGGAGAGAGCCGUGCGCUAAAAGUUGG
  gi_545778205_gb_U000 1923100 AGAUAAAAAGAGACCGAACACGAUUCCUGUAUUCGGUCCAGGGAAAUGGCUCUUGGGAGAGAGCCGUGCGCUAAAAGUUGG 1923180
                               ********************************************************************************* PP

                                                                                                NC
                               >,,,,,,,,,<<<______>>>:::::::::::::::::::::::::::::::::::::::::: CS
               RF00101      82 CAUUAAuGuAGGCUuAuUcGCCuuaCucuUUAAGaaUAGuuGAguACgucaguUUuuCcAauUU 145    
                               CAUUAAUG+AGGCUUA U+GCCUU+C CUUUAAGAAUAG+UGA +ACG+CAG UUUUCCA+UUU
  gi_545778205_gb_U000 1923181 CAUUAAUGCAGGCUUAGUUGCCUUGCCCUUUAAGAAUAGAUGACGACGCCAGGUUUUCCAGUUU 1923244
                               **************************************************************** PP

RNAfold
>gi_545778205_gb_U000_267
GAUAAAAAGAGACCGAACACGAUUCCUGUAUUCGGUCCAGGGAAAUGGCU
CUUGGGAGAGAGCCGUGCGCUAAAAGUUGGCAUUAAUGCAGGCUUAGUUG
CCUUGCCCUUUAAGAAUAGAUGACGACGCCAGGUUUUCCAGUUU
..........(((((((.(((.....))).))))))).((.(..(((((((((....))))))))).).))((((.(((((......((((((......))).))).((........))........))))).))))....... (-41.10)

Length sequence

: 144

Length match:

143