gi_545778205_gb_U000_268

cmsearch-Rfam

Family :

SraG

Id:

RF00082

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This RNA was discovered in E. coli during a large scale screen [1]. The function of
this RNA is unknown. Evidence was found for specific cleavage of this RNA [1].

Score:

164.2

E-value:

1.4e-31

From sequence:

3311227

To sequence:

3311398

Alignments:

                                                                                                                 NC
                               <<<<-<<--<<<----<<<<-<<<<<<<______________________..._________>>>>>>>--->>>>----- CS
               RF00082       1 CUuCAcgCugCAUCCUCGCGACUAAuGACAAccCUuAuccuuCuuuAaGu...UAaAGuCUCUCaUUAGCCGCGCGAACCU 78     
                               CUUC :GC GCAUCCUCGCGACUAAUGACAACCCU+A+CC +CU UA+GU   UAAAG+CUCUCAUUAGCCGCGCGAACCU
  gi_545778205_gb_U000 3311227 CUUC-UGC-GCAUCCUCGCGACUAAUGACAACCCUAACCCAGCUCUAUGUgggUAAAGCCUCUCAUUAGCCGCGCGAACCU 3311305
                               ****.***.************************************************************************ PP

                                                                                                                 NC
                               ->>>-->>>>>>,,,,,<<_______________________________>>,,,,,,,,,,,,,,,.,,,,,,,,,,<<< CS
               RF00082      79 CUGcAacgGaAGAuCcUucuuauAaAucAacAauAaCAuUauuuUacuGUgaUaUAUgAUgaCuUCu.CuagAAAAAAGGG 158    
                               CUGCAAC:GAAGAUC+UUC    A+A CAACAAUA CAUUA UUU C+GUGA AU UG UG C UC  CU GAAAAAAGGG
  gi_545778205_gb_U000 3311306 CUGCAACGGAAGAUCAUUC----AUAGCAACAAUA-CAUUAGUUUCCAGUGA-AU-UGCUGCCGUCAgCUUGAAAAAAGGG 3311379
                               *******************....************.****************.66.799********************** PP

                                                   NC
                               <<<_____>>>>>>::::: CS
               RF00082     159 GCcAuauagGCCCCuUUUc 177    
                               GCCA + AGGCCCC+UUU+
  gi_545778205_gb_U000 3311380 GCCACUCAGGCCCCCUUUU 3311398
                               ******************* PP

RNAfold
>gi_545778205_gb_U000_268
AUCUUCUGCGCAUCCUCGCGACUAAUGACAACCCUAACCCAGCUCUAUGU
GGGUAAAGCCUCUCAUUAGCCGCGCGAACCUCUGCAACGGAAGAUCAUUC
AUAGCAACAAUACAUUAGUUUCCAGUGAAUUGCUGCCGUCAGCUUGAAAA
AAGGGGCCACUCAGGCCCCCUUUUCUG
((((((((.(((...(((((.(((((((........(((((........)))))........)))))))...))))).....)))..))))))))........(((.((((.((((.......)))).)))).))).........(((((..((((((.....)))))).))))).. (-53.30)

Length sequence

: 177

Length match:

170