gi_545778205_gb_U000_270

cmsearch-Rfam

Family :

sraL

Id:

RF01408

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

151.2

E-value:

2.1e-35

From sequence:

4278066

To sequence:

4277926

Alignments:

                                                                                                                 NC
                               :(((((((,,,,,<<_____>>,,,,,,,,<<<<___>>>>,,))))))),(((,<<<____>>><<<<<<______>>>> CS
               RF01408       1 gucagCaCAAACCGGAACCUCCaucAaaugCuCgAuacGaGGGGuGcugauGuCGGGGGAAACCCuCccGcaaaucAgCgg 81     
                               +UCA:CAC AACCGGAACCUCCA+CA +UGCUC:A A:GAGG GUG:UGA+GUCGGGGGAAACCCUCC:G:+ A+CA:C:G
  gi_545778205_gb_U000 4278066 AUCAACACCAACCGGAACCUCCACCACGUGCUCGA-AUGAGGUGUGUUGACGUCGGGGGAAACCCUCCUGUGUACCAGCGG 4277987
                               **********************************9.8******************************************** PP

                                                                                              NC
                               >>,,,,,,,,,,))),,,,,,,,,,,,.,<<<<<<<<<<<<<______>>>>>>>>>>>>>: CS
               RF01408      82 GaUAaaGcgAAAGaCaAagaCcGgAaa.caaaCuaaaGCGCCuuuaguGGCGCuuuaGuuuU 142    
                               GAUA+AG+GAAAGACAAAGACCGGAAA CAAACUAAAGCGCC+UU GUGGCGCUUUAGUUUU
  gi_545778205_gb_U000 4277986 GAUAGAGAGAAAGACAAAGACCGGAAAaCAAACUAAAGCGCCCUU-GUGGCGCUUUAGUUUU 4277926
                               *********************99999889**************99.99************** PP

>>

RNAfold
>gi_545778205_gb_U000_270
AAAACUAAAGCGCCACAAGGGCGCUUUAGUUUGUUUUCCGGUCUUUGUCU
UUCUCUCUAUCCCGCUGGUACACAGGAGGGUUUCCCCCGACGUCAACACA
CCUCAUUCGAGCACGUGGUGGAGGUUCCGGUUGGUGUUGAUG
..((((((((((((.....))))))))))))(((...(((((.....................)))))...)))((.(((...)))))..((((((((((((((..(((......)))..)))))........))))))))) (-45.10)

Length sequence

: 142

Length match:

139