gi_545778205_gb_U000_273

cmsearch-Rfam

Family :

sroC

Id:

RF00369

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial sroC RNA genes of around 160 bases in
length. sroC is found in several Enterobacterial species but its function is unknown [1].

Score:

174.8

E-value:

1e-38

From sequence:

686843

To sequence:

686681

Alignments:

                                                                                                                  NC
                              :::::::::::(((,,,,<<<<<<_____>>->>>><<<<<<<<<<-<<------<<<-<<<-------<<<<<<<<<_____ CS
               RF00369      1 ACUAAuUAaAAccaaaagGGGcGGgAuuUCCugCCCuCuCGauuGuugcucAGCACGGACagACUAUAaGccgGgUGGUCGUU 83    
                              ACUAAUUA AA::A+ AGGGGCGG+A+UUCC GCCCUCUCGAUUGUU:C +AGCACGGACAGACUAUA+GCC:G:UGGUCGUU
  gi_545778205_gb_U000 686843 ACUAAUUACAAGAACCAGGGGCGGAAAUUCCAGCCCUCUCGAUUGUUACGUAGCACGGACAGACUAUACGCCUGAUGGUCGUU 686761
                              *********************************************************************************** PP

                                                                                                               NC
                              __>>>>>>>>>>>>---->>>----------->>->>>>>--->>>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,,))): CS
               RF00369     84 CCCCAcCcggCcuGAAaACCGcAaaacGCuGggcAaCaauCUUCGaGgGUAGCgcUgcuacCcuUUUUUUUcuuagugga 163   
                              CCCCA:C:GGCCUGAAAACCGCAA+ACGCUGGG:AACAAUCUUCGAGGGUAGC+ U +   C+  U    UCUU++U:: 
  gi_545778205_gb_U000 686760 CCCCAUCGGGCCUGAAAACCGCAAUACGCUGGGUAACAAUCUUCGAGGGUAGCAGUUAACGCUGCUACCCUCUUUUUUCU 686681
                              ******************************************************************************** PP

RNAfold
>gi_545778205_gb_U000_273
GAAAAAAGAGGGUAGCAGCGUUAACUGCUACCCUCGAAGAUUGUUACCCA
GCGUAUUGCGGUUUUCAGGCCCGAUGGGGAACGACCAUCAGGCGUAUAGU
CUGUCCGUGCUACGUAACAAUCGAGAGGGCUGGAAUUUCCGCCCCUGGUU
CUUGUAAUUAGU
.......(((((((((((......)))))))))))...(((((((((..((((....((((.....(.(((.(((((.......))))).))).).....))))...))))..)))))))))....((((.(((...)))))))((((((.....)))))). (-63.60)

Length sequence

: 162

Length match:

161