gi_545778205_gb_U000_274

cmsearch-Rfam

Family :

sroD

Id:

RF00370

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial sroD RNA genes of around 90 bases in
length. sroD is found in several Enterobacterial species but its function is unknown [1].

Score:

115.1

E-value:

2.5e-24

From sequence:

1888102

To sequence:

1888017

Alignments:

                                                                                                                 NC
                               ::::::::::::::<<<-<<<_______________>>>---------------->>->-<<<<<<<<_____>>>>>>>> CS
               RF00370       1 uUaCGUGACGAAGCgCGcGgcAAAGUGGACAAUAAAgcCUgAGcguuaAGUcAGUCGucAgaCGCCGGUUAAgCCGGCGuu 81     
                               UUACGUGACGAAGCGCGCGGCAAAGUGGACAAUAAAGCCUGAGCGUUAAGUCAGUCGUCAGACGCCGGUUAA+CCGGCGUU
  gi_545778205_gb_U000 1888102 UUACGUGACGAAGCGCGCGGCAAAGUGGACAAUAAAGCCUGAGCGUUAAGUCAGUCGUCAGACGCCGGUUAAUCCGGCGUU 1888022
                               ********************************************************************************* PP

                                     NC
                               ::::: CS
               RF00370      82 UUUUu 86     
                               UUUUU
  gi_545778205_gb_U000 1888021 UUUUU 1888017
                               ***** PP

>>

RNAfold
>gi_545778205_gb_U000_274
AAAAAACGCCGGAUUAACCGGCGUCUGACGACUGACUUAACGCUCAGGCU
UUAUUGUCCACUUUGCCGCGCGCUUCGUCACGUAA
.....(((((((.....)))))))...(((..((((....(((.(.(((...............)))).)))....))))))).. (-25.20)

Length sequence

: 85

Length match:

84