gi_545778205_gb_U000_275

cmsearch-Rfam

Family :

sroD

Id:

RF00370

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial sroD RNA genes of around 90 bases in
length. sroD is found in several Enterobacterial species but its function is unknown [1].

Score:

26.8

E-value:

0.0087

From sequence:

27198

To sequence:

27282

Alignments:

                                                                                                  NC
                             ::::::::::::::<<<-~~~~~~---------->>->-<<<<<<<<___~~~~~>>>>>>>>::::: CS
               RF00370     1 uUaCGUGACGAAGCgCGc*[27]*uuaAGUcAGUCGucAgaCGCCGGUUA*[2]*CCGGCGuuUUUUu 86   
                             +U+CGUG CGA   :CG+       UAAGU A  CG :A:A:GCCGGU       CCGGC:U:UUUU+
  gi_545778205_gb_U000 27198 CUGCGUGUCGAUAUUCGU*[24]*CUAAGUUAUGCG-AAAAUGCCGGUCU*[5]*CCGGCAUUUUUUA 27282
                             *****************8...5..4789999999**.89********643..5..************* PP

RNAfold
>gi_545778205_gb_U000_275
CUGCGUGUCGAUAUUCGUGAAGUCGAUUAAGUCAUUAGCAGCCUAAGUUA
UGCGAAAAUGCCGGUCUUGUUACCGGCAUUUUUUAU
(((((((.(..((.(((......))).)).).)))..))))............((((((((((((......))))))))))))... (-25.00)

Length sequence

: 86

Length match:

83