gi_545778205_gb_U000_276

cmsearch-Rfam

Family :

sroE

Id:

RF00371

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial sroE RNA genes of around 90 bases in
length. sroE is found in several Enterobacterial species but its function is unknown [1].

Score:

116.6

E-value:

3.2e-30

From sequence:

2640686

To sequence:

2640595

Alignments:

                                                                                                                 NC
                               :::::::::<<<<<<<<<___>>>>>>>>>--------<<<<<<<--------<<<__________>>>--------->>> CS
               RF00371       1 AuAACGUGauGGGaaGCGacaCGCuuCCCgUGUAUGAUuGaaCCcGCAUGGCUCccGuaucauucgggGAAGCGcUGAgGG 81     
                               AUAACGUGAUGGGAAGCG C+CGCUUCCCGUGUAUGAUUGAACCCGCAUGGCUCCCG+A+CAUU +GGGAAGCG+UGAGGG
  gi_545778205_gb_U000 2640686 AUAACGUGAUGGGAAGCGCCUCGCUUCCCGUGUAUGAUUGAACCCGCAUGGCUCCCGAAACAUUGAGGGAAGCGUUGAGGG 2640606
                               ********************************************************************************* PP

                                           NC
                               >>>>::::::: CS
               RF00371      82 uuCaUUUUUaU 92     
                               UUCAUUUUUAU
  gi_545778205_gb_U000 2640605 UUCAUUUUUAU 2640595
                               *********** PP

RNAfold
>gi_545778205_gb_U000_276
UAAAAAUGAACCCUCAACGCUUCCCUCAAUGUUUCGGGAGCCAUGCGGGU
UCAAUCAUACACGGGAAGCGAGGCGCUUCCCAUCACGUUAU
......(((((((.((..((((((...........))))))..)).))))))).........((((((((...)))))))).......... (-34.20)

Length sequence

: 91

Length match:

90