gi_545778205_gb_U000_277

cmsearch-Rfam

Family :

sroH

Id:

RF00372

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial sroH RNA genes of around 160 bases in
length. The function of this family is unknown [1].

Score:

202.0

E-value:

3.4e-51

From sequence:

4190487

To sequence:

4190327

Alignments:

                                                                                                                 NC
                               ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
               RF00372       1 aaAaAuAaGaagaCAUGuUauuauauUuaAGGAUGCAGCAGACUGAauAAAUuCAGACAUCCCGCaACauGCGauUAUCGC 81     
                               +AAAAUAAGAA+ACAUGUU+U+AU+UU++AGGAUGCAGCAGACUGAA+AAAUUCAGACAUCCCGCAAC+UGCGAUUAUCGC
  gi_545778205_gb_U000 4190487 GAAAAUAAGAACACAUGUUCUCAUCUUCCAGGAUGCAGCAGACUGAAGAAAUUCAGACAUCCCGCAACCUGCGAUUAUCGC 4190407
                               ********************************************************************************* PP

                                                                                                                NC
                               ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<<<<<____>>>>>>:::: CS
               RF00372      82 AaGGUCAAGGCaaaGUCCGGUAAuGGuGuUCUGAAUACCAGAGAUAaUUCUCUGGCGAAACCCACCUuAAGGUGGGUUUU 161    
                               AAGGUCAAGGCAAAGUCCGGUAAUGG+GUUCUGAAUACCAGAGAUAAUUCUCUGGCGAAACCCACCUUAAGGUGGGUUUU
  gi_545778205_gb_U000 4190406 AAGGUCAAGGCAAAGUCCGGUAAUGGCGUUCUGAAUACCAGAGAUAAUUCUCUGGCGAAACCCACCUUAAGGUGGGUUUU 4190327
                               ******************************************************************************** PP

>>

RNAfold
>gi_545778205_gb_U000_277
AAACCCACCUUAAGGUGGGUUUCGCCAGAGAAUUAUCUCUGGUAUUCAGA
ACGCCAUUACCGGACUUUGCCUUGACCUUGCGAUAAUCGCAGGUUGCGGG
AUGUCUGAAUUUCUUCAGUCUGCUGCAUCCUGGAAGAUGAGAACAUGUGU
UCUUAUUUUC
(((((((((....))))))))).((((((((....))))))))...((((...((......))..))))....(((((.((((...))))))))).(((((((((((((....)))))......))))))))((((((((((((....)))))))))))) (-62.50)

Length sequence

: 160

Length match:

159