gi_545778205_gb_U000_278

cmsearch-Rfam

Family :

sroH

Id:

RF00372

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial sroH RNA genes of around 160 bases in
length. The function of this family is unknown [1].

Score:

21.5

E-value:

0.0095

From sequence:

4190326

To sequence:

4190350

Alignments:

                                                         NC
                               :::::<<<<<<____>>>>>>:::: CS
               RF00372     137 CGAAACCCACCUuAAGGUGGGUUUU 161    
                               C AAACCCACCUUAAGGUGGGUUU 
  gi_545778205_gb_U000 4190326 CAAAACCCACCUUAAGGUGGGUUUC 4190350
                               ************************* PP

RNAfold
>gi_545778205_gb_U000_278
AGUGAAAUUUUUCACCAUUGCCUACAACUUAUUGAGAAAUAAGCAGCUUC
CUCAGCCCUCAAAAUAACAAAACCCACCUUAAGGUGGGUUUCGCCAGAGA
AUUAUCUCUGGUAUUCAGAACGCCAUUACCGGACUUUGCCUUGACCUUGC
GAUAAUCGCA
.(((((....)))))((..((......((((((....))))))..(((.....))).............(((((((((....))))))))).((((((((....))))))))..........((......)).....))..))....(((((...))))) (-42.40)

Length sequence

: 160

Length match:

23