cmsearch-Rfam

Family :

Id:

Type:

Taxonomy:

Ontology:

Description:

Score:

E-value:

From sequence:

To sequence:

Alignments:

                                         vv             vv                                                       NC
                               :::<<<<<<<<<-<<<____>>>-->>>>>>>>>,,,[[[[,,,,,,,~~~~~~((((((,,,,,~~~~~~~~~~~~,))) CS
               RF02424       1 AAAaaGCCCGCuauGCGUCgGCaUcaGCGGGCuucaGuGCGGuacgAc*[37]*uuaGCuGUUUc*[13]**[ 8]*AaGC 121    
                                 AAAGCCCG UAUGCGUC GCAUC  CGGGCUU   UGCG                                        
  gi_545778205_gb_U000 3542986 GGAAAGCCCGGUAUGCGUCUGCAUC--CGGGCUUUUUUGCGU------*[28]*-----------*[14]**[17]*---- 3543084
                               ***********************77..*********888884.........9................*.....9...... PP

                                                                v                v   NC
                               ))),,,,,,,,,,,]]]]--------------<<<<<<________>>>>>>: CS
               RF02424     122 ugaaAUCAAAUCGACGCaAGgCauCAUccUAaCaCGCcucuguagagGCGuGC 174    
                                             CGCA GG    AU   AAC C C:  U+ A A:G G G 
  gi_545778205_gb_U000 3543085 --------------CGCAGGG----AUGAAAACUCGCUAAUACACAGGUGUGG 3543119
                               ..............9***997....67899*********************** PP

RNAfold

Length sequence

Length match: