Alignments: NC
::::::::<<<<<_______>>>>>,{{{{-{{{{{{,{{{{{{{{{----{{{-{{{,,<<<--<<<<<-....<<<<<< CS
RF00177 1 uuuauggAGaGuuUGAUCcUggCuCAGggcGaaCGCuGGCGGcgcGcuUaAcaCAuGCAAGuCGagcccca....cggggc 77
++++UG+AGAGUUUGAUC UGGCUCAG:::GAACGCUGGCGGC::GC+UAACACAUGCAAGUCGA:C:::A ::::::
gi_545778205_gb_U000 3428762 AAAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAacagGAAACA 3428682
**********************************************************************99999****** PP
v v v NC
<____>>>>>>>...->>->>>>>>,,,,,,[[[,,,,,,((((((((--((---(((((((,<<<<----<<<<<<<___ CS
RF00177 78 cuuaaggccccg...agggggcGgCGaAcGGGuGAGUAAcgCGcgggcAAccUacCcccgggugcgGgAUAccccccgGAA 155
: U++::::::: +::G:G:GGCG ACGGGUGAGUAA+::::GGG A:CU+CC :::GG+G GGGAUA C::C:GGAA
gi_545778205_gb_U000 3428681 GCUUGCUGUUUCgcuGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGA-AACUGCCUGAUGGAGGGGGAUAACUACUGGAA 3428602
************9999********************************.9******************************* PP
v v NC
_>>>>>>>----->>>>,,,,,<<<<<<<<<<____>>>>>>>>>>,,,,<<<..........._____>>>,)))))))- CS
RF00177 156 AcggggggUAAUACcgcAUaaugccccggcccguaugggccggggcuAAAGgc...........auuuagcCGcccgggGA 225
AC:G::G UAAUACC CAUAA ::CG+A+G:: AAA::: ++:::GCC::: GA
gi_545778205_gb_U000 3428601 ACGGUAGCUAAUACCGCAUAAC-------GUCGCAAGAC-------CAAAGAGggggacccucgGGCCUCUUGCCAUCGGA 3428535
**********************.......9********9.......******99*****9988666666************ PP
v NC
-))))))))))<<<--<-<<<--<<<<<<<<_______>>>>>>>>>>>----->>>>,,<<<<<<<<____>>>>--->> CS
RF00177 226 ugggcccgCGccccAUcAGcuAGuuGGuggGGUAAuGGCccaCCaaggCgAuGAggggUAGccGgccuGAGAgggcGauCg 306
UG: CCC:::::::AU:AGCU GUUGGUG:GGUAA GGC:CACCAAGGCGA+GA::::UAGC:G::CUGAGAGG::GA C:
gi_545778205_gb_U000 3428534 UGUGCCCAGAUGGGAUUAGCUUGUUGGUGGGGUAACGGCUCACCAAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCA 3428454
********************************************************************************* PP
NC
>>]]],<<<<<<__________>>>>>>,<<<<____>>>>,,,}}}}}}-},,,,,<-<<<---<<<<<____>>>>>-> CS
RF00177 307 gCCaCAcuGGgaCUGAGAcACGgcCCagACuCCUACGGGaGGCAGCaGugggGAAUauUgcgCAAugGgcGaAAgcCugAc 387
GCCACACUGG:ACUGAGACACGG:CCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGC:CAAUGGGCG AAGCCUGA:
gi_545778205_gb_U000 3428453 GCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAU 3428373
********************************************************************************* PP
v NC
>>>,}}-}}}}}},,<<<<------<<<<____>>>>----->>>>,,,<<<<<<<---<-----<<<___........__ CS
RF00177 388 gcaGCgAcgCCGCGUGgggGAuGAAggccUUcGggccGUAAAcccCUuUcccggGgGAagAaaaaccgaua........uu 460
GCAGC:A:GCCGCGUG:::GA+GAA::CCUUCGGG::GUAAA:::CUUUC ::GGGGA GAA ::G++A
gi_545778205_gb_U000 3428372 GCAGCCAUGCCGCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAG-GGAGUAAaguuaauaCC 3428293
************************************************************998.78888888999887544 PP
v NC
____>>>----->---->>>>>>--->,,<<<<<------<<<<<-----<<____>>------->>>>>>>>>>,}}}}} CS
RF00177 461 uuaucgguuuGAcggUAcCccgggAagAAGcccCGGCUAAcuccGUGCCAGCAGCCGCGGUAAuACggagGgggCaaGCGu 541
UU+ C::+UUGACG UACCC:: GAAGAAGC:CCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGG:GCAAGCGU
gi_545778205_gb_U000 3428292 UUUGCUCAUUGACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGU 3428212
45558999************************************************************************* PP
v v v NC
}}}}},,,,,,,,,,{{{-----{,[[[[-[-[[[,<<<<<<<-<<<<<<<<<<<----<<<<<<<_____>>>>>>>--> CS
RF00177 542 ugccCGGAaUuAuUGGGcGUAAAGgGcgcGcAgGcGGcccggcAaGucgggcgcgAAAucccgcgGCUcAACcgcgggauc 622
U:::CGGAAUUA+UGGGCGUAAAG GC:CG AGGCGG:::G::AAGUC:G::G::AAAU CC: GGCUCAACC :GG A+:
gi_545778205_gb_U000 3428211 UAAUCGGAAUUACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACU 3428131
********************************************************************************* PP
v NC
>>>>>>>>-->>>>>>>>>,,,(((((((((--(((((((<<--<<<<<<<<---<<<______>>>------>>>>>>>> CS
RF00177 623 gcgcccgaaACugccgggCUuGaGuccggccGAgGggggcggAAcucccgguGUAGcgGUGAAAugCGUAGAuaucgggag 703
:C::C:GA+ACU::C:::CUUGAGU ::G::GAGGGGGG::GAA:UCC:GGUGUAGCGGUGAAAUGCGUAGA AUC:GGA:
gi_545778205_gb_U000 3428130 GCAUCUGAUACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAG 3428050
********************************************************************************* PP
v v v v NC
-->>,,,,<--<<____>>>)))))))-))))))-))),,,]]]]--]]]],,,,<<<<<<---<<---<<<<________ CS
RF00177 704 GAacACCacugGCGAAGGCggccccCuGggccgguaCuGACgCugAggcgCGAAAGCguGGGgAgCaAAcgGGAUUAGAUA 784
GAA:ACC+ UGGCGAAGGC :CCCCCUG::C:: ACUGACGCU AGG:GCGAAAGCGUGGGGAGCAAAC:GGAUUAGAUA
gi_545778205_gb_U000 3428049 GAAUACCGGUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUA 3427969
********************************************************************************* PP
NC
_>>>>--->>>>>>>>,,,,,,,,,,((((((,,<<<<<<<<<<<<_____>>>>>>>>>>>>,,,<<____>>,,,,,)) CS
RF00177 785 CCCcgGUAGuCCacGCcgUAAACGAUGggcgCUAGgcgccggggggauuaaccccccggcgcCgaAGcuAAcgCauUAAGc 865
CCC:GGUAGUCCACGCCGUAAACGAUG::::CU GG::: : G:: UU A::C : :::CCG AGCUAACGC+UUAAG:
gi_545778205_gb_U000 3427968 CCCUGGUAGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGU 3427888
********************************************************************************* PP
NC
))))}}}},<<<------<<<<____>>>>---->>>,,,,,,,,{{{{{-{{{{{{{-{{,,{{{{{{{{{{{{{{{{{, CS
RF00177 866 gccCCgCCUGgGGAgUACggcCGCAAGgcugAAACuCAAAGGAAUuGaCgGgGgCCCGCaCAAGCGguGgagcauGuGGuU 946
:::CCGCCUGGGGAGUACG:CCGCAAGG:U+AAACUCAAA GAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUU
gi_545778205_gb_U000 3427887 CGACCGCCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUU 3427807
********************************************************************************* PP
v v NC
,,,<<<<________>>>>,,,,,,,,{{{{{{{,,,,,((((((((,,<<<<<<<____>>>>>>>,<<<<____>>>>) CS
RF00177 947 UAAuuCGAuGcaAcgCGaaGAACCUUACCcgggcUUGAcgugccgggaaccccccgGAaAcgggggguccccuuaaggggc 1027
UAAUUCGAUGCAACGCGAAGAACCUUACC:GG:CUUGAC:U:C::GGAA ::::C:GA A:G:::: +: CCUU +GG :C
gi_545778205_gb_U000 3427806 UAAUUCGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAAC 3427726
********************************************************************************* PP
NC
))))-))),[[-[[[[--[[[[[[[[[,,,((((((<<<____>>>,,<<<<______>>>>,,)))))),,,,,((((,< CS
RF00177 1028 ccggacacAGGUGcugCAuGgcuGuCGUCAGCuCGuguCGUGAGauGUcgGGUUAAGUCCcgcAaCGaGCGCAACCCccgc 1108
C::GA:A:AGGUGCUGCAUGGCUGUCGUCAGCUCGUGU:GUGA:AUGU:GGGUUAAGUCCC:CAACGAGCGCAACCC::+:
gi_545778205_gb_U000 3427725 CGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAU 3427645
********************************************************************************* PP
NC
<<<<<<---<<--<<<______>>>>>---->>>>>>>,,<<<<<<<<_____>>>>>>>>,,,,,)))),,,,]]]]-]] CS
RF00177 1109 cccuagUUgCcAucgguuuauuccggGcACUcuaggggGACcgCCggcGauAAgccGGagGAAGGuggGGAuGACGuCAag 1189
CC:U:GUUGCCA+CGG U ++CCGGG+ACUC:A:GG:GAC:GCC:G:GAUAA:C:GGA:GAAGGU::GGAUGACGUCAAG
gi_545778205_gb_U000 3427644 CCUUUGUUGCCAGCGG-UCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAG 3427565
****************.88899*********************************************************** PP
NC
]---]]]]]]]],,,,}}}}}}},,,}}-}}}}}}}}}},,,<<<<<<<-----<<<--<<---<<<____>>>--->>-- CS
RF00177 1190 uCauCauggCCCUUAugcccgGGGCuaCACaCgugcuaCAAUGgccggcACAaaggGuaGCaAagccGcGAggcggAGCuA 1270
UCAUCAUGGCCCUUA+G:CC:GGGCUACACACGUGCUACAAUG:C::::ACAAAG:G+AGC+A ::CGCGAG:: +AGC
gi_545778205_gb_U000 3427564 UCAUCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGG 3427484
********************************************************************************* PP
NC
-->>>----->>>>>>>,,,,,,<---<<<<<<<<________>>>>>>>>--->,,,,,}}}}},,,,,<<<<<<<<___ CS
RF00177 1271 AUCccauAAAgccggcCucAGUUCGGAcuGgaGgCUGcAAcUCGcCucCagGAAGuuGGAauCGCUAGUAaucGcggcUCA 1351
A C:CAUAAA::::G:C +AGU CGGA:UGGAG:CUGCAACUCG:CUCCA:GAAGU+GGAAUCGCUAGUAAUCG:GG:UCA
gi_545778205_gb_U000 3427483 ACCUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCA 3427403
********************************************************************************* PP
NC
____>>>>>>>>,,,,,,}}---}}}}}}}}}}-}},,<-<<-<<---<<<<<<<<--<<<<<<<<<<<<----<<<<<<- CS
RF00177 1352 GcAugccgCgguGAAUACGuUCcCGGGcCuuGuACaCACCGcCCGUCAcgcCacggaAgccggccccgcCcGAAGccgccg 1432
G AU:CC:CGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCAC:CCA::G+A::::::::C::: GAAG:::::+
gi_545778205_gb_U000 3427402 GAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUA 3427322
********************************************************************************* PP
NC
<<<<--<<____>>->>>>>>>>>>--->>>>>>>>>>>>-->>>>>>>>---->>-->>-->,<<<<<<<<<<____>>> CS
RF00177 1433 cgccAAccuuaaggaggcgggcggCuAaGgcggggccggcgAccggGgcgAAGUCGUAaCAAGGuagCcguaccGGAAggu 1513
::::AACCUU GGA:::::::::C A :::G::::::::GAC::GGG:GAAGUCGUAACAAGGUA:CCGUA::GGAA::U
gi_545778205_gb_U000 3427321 GCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCU 3427241
********************************************************************************* PP
NC
>>>>>>>::::::::::::: CS
RF00177 1514 gcgGcugGAUcAccUcCUUu 1533
GCGG:UGGAUCACCUCCUU
gi_545778205_gb_U000 3427240 GCGGUUGGAUCACCUCCUUA 3427221
******************** PP
>> |
