gi_545778205_gb_U000_29

cmsearch-Rfam

Family :

C0299

Id:

RF00119

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

This family consists of a group of Shigella flexneri and Escherichia coli RNA genes which are
78 bases in length and are found between the hlyE and umuD genes. The function
of this RNA is unknown.

Score:

111.9

E-value:

3.5e-23

From sequence:

1230629

To sequence:

1230707

Alignments:

                                                                                                               NC
                               <<--<<<<-<<----<<<_____________>>>---->>->>>>-->>----<<<<<<<<<_______>>>>>>>>>: CS
               RF00119       1 GCCaCgugAgCACAgGauAAGAgAACGAAAAauCAGCAGcCuauGCAGCGACAaauauuGauAGCCUGAauCaguauuG 79     
                               GCCACGUGAGCACA+GAUAAGAGAACGAAAAAUCAGCAGCCUAUGCAGCGACAAAUAUUGAUAGCCUGAAUCAGUAUUG
  gi_545778205_gb_U000 1230629 GCCACGUGAGCACAAGAUAAGAGAACGAAAAAUCAGCAGCCUAUGCAGCGACAAAUAUUGAUAGCCUGAAUCAGUAUUG 1230707
                               ******************************************************************************* PP

RNAfold
>gi_545778205_gb_U000_29
CCACGUGAGCACAAGAUAAGAGAACGAAAAAUCAGCAGCCUAUGCAGCGA
CAAAUAUUGAUAGCCUGAAUCAGUAUUG
...(((.................)))........((.((....)).))....(((((((((.......))))))))). ( -8.60)

Length sequence

: 78

Length match:

77