gi_545778205_gb_U000_30

cmsearch-Rfam

Family :

C0465

Id:

RF00116

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial RNA genes of 78 bases in length which
are found between the tar and cheW genes in E. coli and Shigella flexneri. The
function of this RNA is unknown.

Score:

111.6

E-value:

2.9e-22

From sequence:

1972739

To sequence:

1972816

Alignments:

                                                                                                              NC
                               <<____>>,,,<<<<----<<_____>>->>>>---<<<<<<----<<<<<<<<<_______>>>>>>>>>->>>>>> CS
               RF00116       1 gGGAAACuUUAuuGCUGAUGCCACCCGCCGCgaAAUuGaaauAAAAaaCCCGauGCGCAGAUCauCGGGuuCauuuCa 78     
                               GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAUAAAAAACCCGAUGCGCAGAUCAUCGGGUUCAUUUCA
  gi_545778205_gb_U000 1972739 GGGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAUAAAAAACCCGAUGCGCAGAUCAUCGGGUUCAUUUCA 1972816
                               ****************************************************************************** PP

RNAfold
>gi_545778205_gb_U000_30
GGAAACUUUAUUGCUGAUGCCACCCGCCGCGAAAUUGAAAUAAAAAACCC
GAUGCGCAGAUCAUCGGGUUCAUUUCA
..........((((....((.....)).))))...((((((....(((((((((.......))))))))).)))))) (-15.70)

Length sequence

: 77

Length match:

76