Alignments: v v NC
:::<<<<<_______>>>>>,{{{{{.{{{{{,{{{{{{{{[-----[[[-[[[,,<<.-<<<---~~~~~~->>>>>,,,,, CS
RF02542 1 CACCAGGuUGAUUCUgCCUGAcgugg.acgCUagucuccgaGAUUaAGCCAUGCAuGc.ucgcGAA*[10]*AgcggCGaAcg 85
A AG UUGAU UG CU A::U: ACGCU G:::C:G: UAA: CAUGCA+G: :CG AG: :CG+ACG
gi_545778205_gb_U000 223776 GAAGAGUUUGAUCAUGGCUCAGAUUGaACGCUGGCGGCAGGC-CUAACACAUGCAAGUcGAACGGU*[30]*AGUGGCGGACG 223881
***********************99649*************8.79*************87888754...9..6889******* PP
v v v NC
,(((,,,,,,<<<<<<<<--<<---<<<<<<<--<<<----<<<<<<<____>>>>>>>----->>>................ CS
RF02542 86 GCUCAGUAauccggccccuAucUaaucgccccaugcggAUAcCcgcgguAAaccgcgGguAAuAcgc................ 152
G U AGUAAU :::::: A:CU+ ::G::::A :GGAUA:C::C:G+AAAC:G::G:UAAUAC:
gi_545778205_gb_U000 223882 GGUGAGUAAUGUCUGGGA-AACUGCCUGAUGGAGGGGGAUAACUACUGGAAACGGUAGCUAAUACCGcauaacgucgcaagac 223963
*****************9.9********************************************9969*************** PP
v v NC
...........................>>>>>>>-->>>>>>>>>><<<--<-<<<--<<<<<<<<_______>>>>>>>>>> CS
RF02542 153 ...........................ggggcgaaUgaggggccggcCuAUcAGcuaGucggUAgGGUAAgGGCcUAccgagg 208
::::C::AUG: :::::: :::AU AGCUAGU:GGU: GGUAA GGC :ACC:AGG
gi_545778205_gb_U000 223964 caaagagggggaccuucgggccucuugCCAUCGGAUGUGCCCAGAUGGGAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGG 224046
*********************************************************************************** PP
v v v NC
>----->>>>,,,<<<<<<<<____>>>>--->>>>))),<<<<<<__________>>>>>>,<<<<____>>>>,,,]]]]] CS
RF02542 209 CgAugAcgGgUaACGGggaAuuagggUucgAUuCCGGAGAGGgAGCCUGAGAGAUgGCUcCCAcgUCCAAGGAcgGCAGCAGG 291
CGA GA :::U A ::::U AG+G:::GA : A A: G:: CUGAGA A G ::C :AC::C+A GG::GGCAGCAG
gi_545778205_gb_U000 224047 CGACGAUCCCU-AGCUGGUCUGAGAGGAUGACCAGCCACACUGGAACUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGU 224128
***********.*********************************************************************** PP
v NC
]-],,,,,<-<<<---<<<<<.___>>>>>->>>>,}}-}}}}}},,,,,,,,,,.....,,<<<<<<______~~~~~~>>> CS
RF02542 292 CGCGAAAcUUgCCcAAccccc.auugggggAGGcAGucAggagacGUaaauuuaa.....gacgggcguGUAAA*[ 3]*cgc 365
:G GAA +UUGC CAA::::C ++G::::A GCAG:CA:G:::CGU++AU +A + :GG::UGUAAA ::C
gi_545778205_gb_U000 224129 GGGGAAUAUUGCACAAUGGGCgCAAGCCUGAUGCAGCCAUGCCGCGUGUAUGAAGaaggcCUUCGGGUUGUAAA*[54]*ACC 224259
*********************9999************************9999988886657777777777776...*..777 PP
v v v NC
>>>,,,..,,<<<<<<-------<<<<-----<<____>>------->>>>>>>>>>,}}}}}}}}}},,,,,,,,,,[[[,, CS
RF02542 366 ccggaa..aAcuGGAGGGCAAGuCuGGUGCCAGCAgCCGCGGUAAUaCCaGCUCCaggAGcguccaugaugauUGcUGCggUU 446
C: + A AA::: GGC A :::GUGCCAGCAGCCGCGGUAAUAC::: ::: AGCGU :A:: +AUU CUG:G: U
gi_545778205_gb_U000 224260 CGCAGAagAAGCAC-CGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAUUACUGGGCGU 224341
77766667*****6.699999************************************************************** PP
NC
,,,,,((((---(((-------------------------------------------------------..----------- CS
RF02542 447 AAAAaGucCGUAgUcggauaauuuuauuuuuuauuaaaaguguuuuuuuaagguguauuauauuauguaa..uuaagaauuua 527
AAA G::CG AG:CGG+U++UU++ U + +U+U+AAA+ + +U+AA UG ++ U ++ +A+ U +A UU+
gi_545778205_gb_U000 224342 AAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAUacUGGCAAGCUUG 224424
****************************************999999999996666666655555555555458999999**** PP
v v v v NC
(((((((((--(((((((<<--<<<<<<<<---<<<______>>>------>>>>>>>>-->>,,,,<--<<____>>>)))) CS
RF02542 528 ggaccGcccggcGgccacggUAuucggcgGcgAgggGUGAAAcccgAuGACCcgccgagGAccaaCagAgGCGAAAGCggugg 610
:G: :::: G+:GG::::: AUUC::: AG::GUGAAA::CG +GA :::GAGGA :A C G GGCGAA GCG::::
gi_545778205_gb_U000 224425 AGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCGGUGGCGAAGGCGGCCC 224507
*********************************************************************************** PP
v v NC
)))-))))))-)))---)))---)))),,,,<<<<<<---<<---<<<<_________>>>>--->>>>>>>>,,,,,,,,,, CS
RF02542 611 cCgagggCggauccGaugAucAAGgaCGuAaGCcgGaGgAuCGAAggcGAUUAGAuACCgccGUAGuuCcgGCaGUAAACgAU 693
CC: :::: :C:GA G:UCA G::CG+AAGC::G:GGA:C AA:::GAUUAGAUACC:::GUAG::C::GC GUAAACGAU
gi_545778205_gb_U000 224508 CCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAU 224590
*********************************************************************************** PP
NC
((((((,<<<<<<<<<<......____..>>>>>>>>>>,,<<____>>...,,)))----))),]]],<<<------<<<<_ CS
RF02542 694 GCCcAcagggcggcgcc......uuua..ggcgccgcccaagaGAAAuc...uAgUgUauGGGCUccGGggguAGUAcccgcG 765
G:C:AC+ GG::G: : + : :C::CC +AG: AA :C +AGU: G:C :C: :GG AGUAC:::CG
gi_545778205_gb_U000 224591 GUCGACUUGGAGGUUGUgcccuuGAG-gcGUGGCUUCCGGAGCUAACGCguuAAGUC----GACCGCCUGGGGAGUACGGCCG 224668
****************9999975333.5799******************99999**9....********************** PP
NC
___>>>>---->>>,,,,,,,,{{{{{-{{{{{{{--{{,,{{{{{{{{{{{{{{{{{,,,,<<<<________>>>>,,,,, CS
RF02542 766 CAAgcggGAAAcuuaAaGAAAUUGACgGAaggACACCACAAGgAgUGgAgUGuGCGGcUUAAuuuGACUCAACGCgggacAaC 848
CAAG::: AAACU:AAA AAUUGACGG :G::C: CACAAG::GUGGAG::UG:GG:UUAA:::GA CAACGC:::++A C
gi_545778205_gb_U000 224669 CAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCG-CACAAGCGGUGGAGCAUGUGGUUUAAUUCGAUGCAACGCGAAGAACC 224750
***********************************.7********************************************** PP
v v v v v NC
,,,{{{{{{{,,,.<<<<<<------~~~~~~-->>>>>>,,,[[-[[[[--[[[[[[[[[,,,((((((<<<____>>>.,< CS
RF02542 849 UUACCagggccga.ggccccuugaGA*[13]*AuggggccgaggGUGGugCAUggCCGUUcuuAAcgcgUgggGUGAccu.Uc 936
UUACC:GG:C+ : : C: + A :G : :+ +GGUG UGCAUGGC:G ::U+A:C:CGUG::GUGA::U U:
gi_545778205_gb_U000 224751 UUACCUGGUCUUGaCAUCCACA----*[33]*ACUGUGAGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUgUU 224856
**********887644444432.......5..4477777899***************************************** PP
NC
<<<______>>>>,,)))))),,,,,((((,..............................<<____>>,,<<<<<<<<.___ CS
RF02542 937 cggUUAAaUccgguAAcgcgUGAGAuccccg..............................ccuuaaggGACccgcgcc.gua 988
:GGUUAA UCC:: AACG:G:G A+CC::+ :C +A G:GAC:::C::: +UA
gi_545778205_gb_U000 224857 GGGUUAAGUCCCGCAACGAGCGCAACCCUUAucuuuuguugccagcgguccggccgggaacUCAAAGGAGACUGCCAGUgAUA 224939
*******************************888888888888888888888888888888888888************99** PP
v NC
_>>>>>>>>,,,,,)))),,,,]]]]-]]]---]-]]]]]]],,,,,}}}}}}},,,}}-}}}}}}}}}},,,<<<<<<____ CS
RF02542 989 AggcgcggGAAGgaggggucaAgAACAGGuCaGuGAugCCCcuAGAUgcccuGGGCUgCACGCgCAcUaCAaUggccgcuuga 1071
A:::G:::GAAGG ::GG+ A:: CA:GUCA U AUG CCCU A G:CC:GGGCU:CAC:CG::CUACAAUG:C:::U+ A
gi_545778205_gb_U000 224940 AACUGGAGGAAGGUGGGGAUGACGUCAAGUCA-UCAUGGCCCUU-ACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACA 225020
*******************************9.55*******85.89********************************9888 PP
v NC
_________~~~~~~>>>>>>..,,,,<---<<<<<<<<______..>>>>>>>>--->,,,,,}}}}},,,,,<<<<<<<<_ CS
RF02542 1072 aauauaaua*[ 8]*gcggcc..aauuGGGAcuggccccUGUAAu..ggggccagGAACguGGAAuUcCUAGUAgucgcgcgU 1152
AA A AA :::G:C A+U :GGA:UGG:::CUG AA G:::CCA:GAA: GGAAU::CUAGUA: CG:G: U
gi_545778205_gb_U000 225021 AAGAGAAGC*[31]*UGCGUCguAGUCCGGAUUGGAGUCUGCAACucGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAU 225128
877766554...6..******999999*****************888************************************ PP
v v v vvvv NC
______>>>>>>>>,,,,,,}}---}}}}}}}}}}-}},,,,<<-<<-<-<<<<<<<<--<<<<<<<<<<<<<<<<<<<<___ CS
RF02542 1153 CAuuAAcgcgcgacGAAUguGUCCCUGUccuUuGUACACACCGcCCGUCGcuAuCucAGAuggcugcccgggcgaagagcuua 1235
CA A :C:CG :GAAU+ GU CC:G::C: UGUACACACCGCCCGUC+C::: : :GA G ::::C::: G ::+UA
gi_545778205_gb_U000 225129 CAGAAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCAUGGGAGUGGGUUGCAAAAGAAGUAGGUA 225211
*********************************************************************99877666655555 PP
vvvv v v NC
_...................>>>>>>>>>>>>>>>>>>>>-->>>>>>>>-->->>-->>,,,,<<<<<<<<<<____>>>>> CS
RF02542 1236 a...................gcucugagcccgggcagcuaGAUgaGaUagAAGUCGUAaCAAGGcugCugucGGaGAACCggc 1299
:: A :::G:::: C GA: : :::GAAGUCGUAACAAGG:::C:GU:GG GAACC:GC
gi_545778205_gb_U000 225212 GcuuaaccuucgggagggcgCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGGAACCUGC 225294
569*****************66666677899**************************************************** PP
NC
>>>>>:::::::: CS
RF02542 1300 aGcagGAUCAuua 1312
:G:::GAUCA
gi_545778205_gb_U000 225295 GGUUGGAUCACCU 225307
************* PP
>> |
