gi_545778205_gb_U000_308

cmsearch-Rfam

Family :

STnc100

Id:

RF02076

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria; Viruses;

Ontology:

Not found

Description:

not description

Score:

34.4

E-value:

2.3e-05

From sequence:

1649432

To sequence:

1649641

Alignments:

                                                                           vv        vv                          NC
                               :::::::::::::(((-------------((.((((((,,,,<<<<<______>>>>>,,,,,,<<<______________ CS
               RF02076       1 uCagguuGaguAUcugUUAaaAaAaUuuuGc.auGGUGAAUCCCCCuGuGCGGaGGGGCgAcUgaugaaaaauguuuauUu 80     
                                C + UU A+  U:::UU       UU UG: :: GUGAAU C   UG+GCG A   G +AC G ::AAA  +  + A+ +
  gi_545778205_gb_U000 1649432 CCCUUUUUAAAGUGAAUU-------UUGUGAuGUGGUGAAUGCGGCUGAGCGCACGCGGAACAGUUAAAACCA--AAAACA 1649503
                               *************99986.......6778888****************************9999887655444..446666 PP

                                                                                                                 NC
                               ______>>>,,<<<_........>>><<<<-<<<_._________>>>->>>>,<<<<<_____>>>>>)))))).))--- CS
               RF02076      81 guuuaUcaugaGcgA........cgCGGGUUcaGU.guaacCAgaCugAACUCACCGGGAGGCACCCGGCACCau.gCAau 151    
                               GU U+ :: G+G::         ::CGG  U:A U GU A C G+ U:A  UCACC GGAGGCACC GGCAC :: :CA  
  gi_545778205_gb_U000 1649504 GUGUUAUGGGUGGAUucucuguaUCCGGCGUUAAUuGUUAACUGGUUAACGUCACCUGGAGGCACCAGGCACUGCaUCACA 1649584
                               666666888888887888888889*******999625677777999999**************************888889 PP

                                                                              NC
                               ---)))-.------<<<<-----<<<<~~~~~~>>>>----->>>> CS
               RF02076     152 AuacagA.aAuuaagcauauauCaagG*[16]*CcuuUUUaUaugc 206    
                               A A:::A + UU A::A:+    AA G      C UU  UA :U::
  gi_545778205_gb_U000 1649585 AAAUUCAuUGUUGAGGACGCGAUAAUG*[17]*CGUUAAUACGUCU 1649641
                               999999988888889999888776655...7..778999999**** PP

>>

RNAfold
>gi_545778205_gb_U000_308
CCUUUUUAAAGUGAAUUUUGUGAUGUGGUGAAUGCGGCUGAGCGCACGCG
GAACAGUUAAAACCAAAAACAGUGUUAUGGGUGGAUUCUCUGUAUCCGGC
GUUAAUUGUUAACUGGUUAACGUCACCUGGAGGCACCAGGCACUGCAUCA
CAAAAUUCAUUGUUGAGGACGCGAUAAUGAAAACGUUAUUACCAAACGUU
AAUACGUCU
((((.....(((((((((((((((((((((..((((......))))..((((((((......(((....((......))..))).....)))).))))(((((((((.......)))))))))..(((((.....))))))))))))))))))))))))))...))))....(((((((....))))))).....((((....)))).. (-70.50)

Length sequence

: 209

Length match:

208