gi_545778205_gb_U000_31

cmsearch-Rfam

Family :

C0719

Id:

RF00117

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

This family consists of a number of bacterial RNA genes, of 222 bases in length, which
are found between the yghK and glcB genes in both Shigella flexneri and Escherichia coli.
The function of this RNA is unknown.

Score:

298.2

E-value:

3.3e-79

From sequence:

3121358

To sequence:

3121579

Alignments:

                                                                                                                 NC
                               :::::<<<<<__________________________>>>>>,,,<<<<<____>>>>>----------------------- CS
               RF00117       1 UAUAGGCGuuAUACUUUACAGCAACAGUACGCcGCUaaCGCAAUuGCuaCCUCugGCaUAACAAGUAUAUCGGGUAAGGGU 81     
                               UAUAGGCGUUAUACUUUACAGCAACAGUACGCCGCUAACGCAAUUGCUACCUCUGGCAUAACAAGUAUAUCGGGUAAGGGU
  gi_545778205_gb_U000 3121358 UAUAGGCGUUAUACUUUACAGCAACAGUACGCCGCUAACGCAAUUGCUACCUCUGGCAUAACAAGUAUAUCGGGUAAGGGU 3121438
                               ********************************************************************************* PP

                                                                                                                 NC
                               ---(((((((,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<__________ CS
               RF00117      82 UUCuguuCCGCACACGCAGgCGCAGAGUAUCGUUAAGAUGUCCAUAUUGUUGUUUUAggCCCGCuaguaauGCGCUACGGG 162    
                               UUCUGUUCCGCACACGCAG+CGCAGAGUAUCGUUAAGAUGUCCAUAUUGUUGUUUUAGGCCCGCUAGUAAUGCGCUACGGG
  gi_545778205_gb_U000 3121439 UUCUGUUCCGCACACGCAGACGCAGAGUAUCGUUAAGAUGUCCAUAUUGUUGUUUUAGGCCCGCUAGUAAUGCGCUACGGG 3121519
                               ********************************************************************************* PP

                                                                                            NC
                               ________>>>>>>>,,,,,,<<<<<<<<___>>>>>>>>,,)))))))::::::::::: CS
               RF00117     163 UAUUUAAUauuguuaAaCCCUgauaauCGCUCCGguuauuUCCGGgauaAAUGUACUACC 222    
                               UAUUUAAUAUUGUUAAACCCUGAUAAUCGCUCCGGUUAUUUCCGGGAUAAAUGUACUACC
  gi_545778205_gb_U000 3121520 UAUUUAAUAUUGUUAAACCCUGAUAAUCGCUCCGGUUAUUUCCGGGAUAAAUGUACUACC 3121579
                               ************************************************************ PP

RNAfold
>gi_545778205_gb_U000_31
AUAGGCGUUAUACUUUACAGCAACAGUACGCCGCUAACGCAAUUGCUACC
UCUGGCAUAACAAGUAUAUCGGGUAAGGGUUUCUGUUCCGCACACGCAGA
CGCAGAGUAUCGUUAAGAUGUCCAUAUUGUUGUUUUAGGCCCGCUAGUAA
UGCGCUACGGGUAUUUAAUAUUGUUAAACCCUGAUAAUCGCUCCGGUUAU
UUCCGGGAUAAAUGUACUACC
...((((((((.......(((((.(((((.(((.((.((((.((((((.(...(((..(((((..((((.((((((.(((((((((((.((....)).)).)))))).))).))).....)))))))..)))))....))).).)))))))))).)))))))))).....)))))........)))).))))((((......))))............... (-53.30)

Length sequence

: 221

Length match:

220