gi_545778205_gb_U000_310

cmsearch-Rfam

Family :

STnc130

Id:

RF02084

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

139.0

E-value:

1e-24

From sequence:

940868

To sequence:

940734

Alignments:

                                                                                          v        v              NC
                              ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::<<______>>------------- CS
               RF02084      1 UAUAucGAAuaauuuaaaaAucAgagauAuAuGcUGAuUUUCAuUcgAAgGuAGUAUUACcccuauagggGgAGuaAUUAUUG 83    
                              UA AUCGAAUAAUUU+AAAAUCA+AGA AUA G+ GAUUUUCA+UCGAA+GUAGUAUUAC : UA+++: GGAGUAAUUAUUG
  gi_545778205_gb_U000 940868 UACAUCGAAUAAUUUGAAAAUCAAAGAGAUAGGUAGAUUUUCACUCGAAAGUAGUAUUACGUGUAAGUGAGGAGUAAUUAUUG 940786
                              *********************************************************************************** PP

                                                                                   NC
                              -----------------------<<<<<<<<____>>>>>>>>::::::::: CS
               RF02084     84 ucCGGUAUCAAAggGGcAUAAAAAAAGCGCCCGcAGGCGCUUUUuaaauuag 135   
                              U+CGGUAUCAAAGGG+ A AAAAAAAGCGCCCGCAGGCGCUUUUUA AUU +
  gi_545778205_gb_U000 940785 UUCGGUAUCAAAGGGAGACAAAAAAAGCGCCCGCAGGCGCUUUUUAGAUUCA 940734
                              **************************************************** PP

RNAfold
>gi_545778205_gb_U000_310
GAAUCUAAAAAGCGCCUGCGGGCGCUUUUUUUGUCUCCCUUUGAUACCGA
ACAAUAAUUACUCCUCACUUACACGUAAUACUACUUUCGAGUGAAAAUCU
ACCUAUCUCUUUGAUUUUCAAAUUAUUCGAUGUA
......((((((((((....)))))))))).((((.......))))..........(((((.............)))))..(((..(((((((((((((.............)))))))).....))))).))) (-27.00)

Length sequence

: 134

Length match:

133