gi_545778205_gb_U000_311

cmsearch-Rfam

Family :

STnc150

Id:

RF01402

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

28.8

E-value:

0.00062

From sequence:

1196592

To sequence:

1196386

Alignments:

                                                                            vv         vv                        NC
                               :::::::::::::::::::::::::::::::::::::::::::::<<<_~~~~~~>>>~~~~~~~---------------- CS
               RF01402       1 CcUUUUAUUgAAAuAuUaUCCUGAUAAUAAcAAuAAAUCUGaUAAGGCA*[13]*GCC*[110]*UCuGAAUUGAGGgAGU 191    
                               CCUU  AU   AA  +    C G  A  AA AAUAAA   G UAAGG A                              GU
  gi_545778205_gb_U000 1196592 CCUUAAAUAUUAACGAGCGUCCGCCAGCAAUAAUAAAA-AGCUAAGGAA*[ 2]*U--*[ 64]*-------------GGU 1196475
                               *************999999999****99*999999885.5888888854...4..4......6...............456 PP

                                                                                vvv v                         v  NC
                               -----------...........--------------------------<<<<<<.<<<<<<-<<_____>>->>>>>>.>> CS
               RF01402     192 UUUGAUAAAUU...........aUUUUGAUAACCGUUCGAAUaCUAAUaacaaa.aacggggaCGUuaAGuCcccguu.uu 259    
                               UUUGAUAA UU           AUUUUGAUAACCGUU G A  CUAA A   A  AACGGG+:CGUUA G: CCCGUU  U
  gi_545778205_gb_U000 1196474 UUUGAUAACUUuuuuugauaaaAUUUUGAUAACCGUUAGCAGCCUAACAAAAAAcAACGGGAGCGUUACGCUCCCGUUaAU 1196394
                               66666666666666666666669*************************9988844***********************548 PP

                               vvv      NC
                               >>>>:::: CS
               RF01402     260 uguuuuUA 267    
                                  UUU A
  gi_545778205_gb_U000 1196393 AAAUUUAA 1196386
                               8999**** PP

RNAfold
>gi_545778205_gb_U000_311
UCAUCGAAAACAUGUAAUGCCGUAGUUUGUUAAAUUUAUUAACGGGAGCG
UAACGCUCCCGUUGUUUUUUGUUAGGCUGCUAACGGUUAUCAAAAUUUUA
UCAAAAAAAGUUAUCAAAACCCCUCGGUAGUUUUGGGGUAGGCUGGCCGG
UCAGGUGGUAGUUCUACUACUAGUCUCCCACAUAGAUAUUCCUUAGCUUU
UUAUUAUUGCUGGCGGACGCUCGUUAAUAUUUAAGGUCUUCAUUGAUUAA
GACAUCCCCAAAGUUA
.................((((((((((((.((((.....(((((((((((...)))))))))))...)))).))))))))....((((.....((((((.......)))))).....))))....)))).((((((((..((..(((.(((..(((((.....)))))))).)))..))...(((((((((((((((...........))))).))).........)))))))..(((((........)))))..))))))))... (-63.40)

Length sequence

: 266

Length match:

205