gi_545778205_gb_U000_312

cmsearch-Rfam

Family :

STnc180

Id:

RF02079

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

195.7

E-value:

2.1e-45

From sequence:

1335499

To sequence:

1335701

Alignments:

                                                                                                                 NC
                               :::::::::<<<<<---<<---------<<<<<_____>>>>>----------------->>---->>>>>,,,,,,,,,, CS
               RF02079       1 UuuaUuaAUACACcuCAgcAAUAaagagcuGAGcauAUCUCaguacagaaaaUaAAAAaaguuuuggGUGUaGCCuAUGau 81     
                                 U+UUAAUACACC+CAGCAAUAA++  :UGAG +UAUCUCA:  CA+AAAAUAA AA +GUU++GGGUGUAGCCUAUGAU
  gi_545778205_gb_U000 1335499 GCUUUUAAUACACCGCAGCAAUAACAGCUUGAG-UUAUCUCAA--CACAAAAUAAUAACCGUUAAGGGUGUAGCCUAUGAU 1335576
                               *********************************.9********..7788999***************************** PP

                                                             v                 v                                 NC
                               ,,,,,,,,,,,,,,,,,,,,,<<<--<-<<<<<<<_________>>>>>>>->------->>><<<-<<_____>>->>>, CS
               RF02079      82 uAauacaAAuAUgAAAUAuUGGuCaUGGaucGGcGCgUUUuCugUgUCgauuCUgUUCUGGgCcgAaCUcAUCUGGaUcgu 162    
                                AA+ACAAAUAUGAAAUAUUGGUC UGGAU GGCGCGUUUUCU UGUC AU CU UUCUGGGC:GAACUC UCUGGAUC:U
  gi_545778205_gb_U000 1335577 CAACACAAAUAUGAAAUAUUGGUCCUGGAUGGGCGCGUUUUCUCUGUCGAUGCUCUUCUGGGCCGAACUCCUCUGGAUCAU 1335657
                               ********************************************************************************* PP

                                                                                       NC
                               ,,,,,,,,,,,,,,,,<<<<<<<<<<<_______>>>>>>>>>>>:::::::::: CS
               RF02079     163 CuuucaCUaAUCucaaaAcCcCGcuggUGcauuaccagCGgGgUuuUUcaUuUuc 217    
                               +++UCACU+AUC C +:ACCCCGC:G         C:GCGGGGU:  UCAUUU C
  gi_545778205_gb_U000 1335658 UACUCACUGAUC-CUUGACCCCGCUG---------CGGCGGGGUU-GUCAUUUGC 1335701
                               ************.9************.........*********7.9******** PP

RNAfold
>gi_545778205_gb_U000_312
UAAAGGGCUUUUAAUACACCGCAGCAAUAACAGCUUGAGUUAUCUCAACA
CAAAAUAAUAACCGUUAAGGGUGUAGCCUAUGAUCAACACAAAUAUGAAA
UAUUGGUCCUGGAUGGGCGCGUUUUCUCUGUCGAUGCUCUUCUGGGCCGA
ACUCCUCUGGAUCAUUACUCACUGAUCCUUGACCCCGCUGCGGCGGGGUU
GUCAUUUGCUUUGCCA
.....(((......((((((...((.......))(((((....))))).....................))))))((..(((((..................(((((((.(((.(((((((..........)).))))).))))))))))........((((((........))))))..((((((((....)))))))))))))..))...))). (-61.20)

Length sequence

: 216

Length match:

201