gi_545778205_gb_U000_313

cmsearch-Rfam

Family :

STnc220

Id:

RF02077

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

34.2

E-value:

0.00062

From sequence:

1051830

To sequence:

1051910

Alignments:

                                             v       v                                                           NC
                               ::::::::((,,,<<<_____>>>,,,,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<_____>>>>>>,,,,,,,,...,) CS
               RF02077       1 AUAcAUucGCUCAGGaCAGgUuCCGCuAGAUUUUAgAAaAUAAUUCAUAUUaGCUCCgUACAGGAGCuUUUUUUaa...UG 78     
                                 A AU CGC C G :CA G : CGCU GAUUU A AAAAUAAU       :GCUCC U   GGAGC:UUUUUUA+   UG
  gi_545778205_gb_U000 1051830 GCAAAUACGCACUGACCAUGCGCCGCUGGAUUUCACAAAAUAAUAU---CAGGCUCCCUCGUGGAGCCUUUUUUAUaucUG 1051907
                               ****************************************998743...3499*****9999*****9999987642337* PP

                                   NC
                               ):: CS
               RF02077      79 CCC 81     
                               CC 
  gi_545778205_gb_U000 1051908 CCU 1051910
                               *** PP

RNAfold
>gi_545778205_gb_U000_313
CAAAUACGCACUGACCAUGCGCCGCUGGAUUUCACAAAAUAAUAUCAGGC
UCCCUCGUGGAGCCUUUUUUAUAUCUGCCU
......((((.......))))..((.((((........((((....(((((((.....)))))))...)))))))))).. (-16.60)

Length sequence

: 80

Length match:

79