gi_545778205_gb_U000_314

cmsearch-Rfam

Family :

STnc240

Id:

RF02074

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

68.2

E-value:

3e-10

From sequence:

2087283

To sequence:

2087209

Alignments:

                                                                        v                          v          NC
                               ::::::::::<<_______>>-----------------.--<<<<<<<<<__________>>>>>>>>>::::::::: CS
               RF02074       1 ucaAuuUaGuGCAaAAUACGCcgCuUGcAAAAAaagAc.AauAACCGACGuUUUuaaAaGCGUCGGUUaUUUUUUUgc 77     
                               +C AUUUAG GCA AAU+CGCCGCU  CAAAAAA+GAC AA AACCGACGUUU ++ A GCGUCGGUU UUUUUU GC
  gi_545778205_gb_U000 2087283 CCCAUUUAG-GCACAAUGCGCCGCUGUCAAAAAAUGACuAAAAACCGACGUUUCAUCA-GCGUCGGUUAUUUUUU-GC 2087209
                               *********.****************************************99988888.**********998887.** PP

RNAfold

>gi_545778205_gb_U000_314
GCAAAAAAUAACCGACGCUGAUGAAACGUCGGUUUUUAGUCAUUUUUUGA
CAGCGGCGCAUUGUGCCUAAAUGGGG
.........((((((((.........))))))))....((((.....))))...(((((...)))))......... (-19.80)

Length sequence

: 76

Length match:

73