gi_545778205_gb_U000_315

cmsearch-Rfam

Family :

STnc250

Id:

RF01409

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

37.5

E-value:

1.8e-05

From sequence:

2590827

To sequence:

2590708

Alignments:

                                                                    v        v                                   NC
                               <<<<_____>>>>,,,,,,,,,~~~~~~,,,,,,<<<<___~~~~~>>>>,,<<<<<<<<<<<<<_____.__>>>>>>>> CS
               RF01409       1 GaaGUCAUGCuuCGUAAAUAAA*[13]*CCGCGCuCCcAUA*[1]*gGGaUAagaaaaGGCGaCuCAACG.AAaGuCGCCu 83     
                               GAAGU AUGCUUCGUAA UAA       C G   ::: AU       :::U ::AAAAGGCGAC:CA  G  A:GUCGCCU
  gi_545778205_gb_U000 2590827 GAAGUUAUGCUUCGUAAGUAAU*[37]*CAGGUUCUUAAUC*[2]*AAAGUUGAAAAAGGCGACACAUUGgCAUGUCGCCU 2590719
                               ******************9986...8..4444455555554..3..45679999************9875268******** PP

                                           NC
                               >>>>>:::::: CS
               RF01409      84 uuuuuGUGCCC 94     
                               UUU:: U  C 
  gi_545778205_gb_U000 2590718 UUUUUAUUGCU 2590708
                               *********** PP

RNAfold
>gi_545778205_gb_U000_315
GCAAUAAAAAAGGCGACAUGCCAAUGUGUCGCCUUUUUCAACUUUCCGAU
UAAGAACCUGCUCAGCGGGUUCUUGCUGUUUGUACUUUGUCUCAGGAAUU
ACUUACGAAGCAUAACUUC
......(((((((((((((......)))))))))))))............(((((((((((...)))))))))))....((((.((((((...((......)).)))))).)))).... (-38.30)

Length sequence

: 119

Length match:

118