gi_545778205_gb_U000_317

cmsearch-Rfam

Family :

STnc380

Id:

RF02055

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

36.4

E-value:

3.6e-05

From sequence:

3777225

To sequence:

3777117

Alignments:

                                      v  v          v                         v      v  v                     v  NC
                               :::::::<<-<<---------<<--<<<<<<<___>>>>>>>---->>----->>->>-----<<-----<<<<<<<<<<< CS
               RF02055       1 UGAguggGuagugGuAacugGccaaaauuGGuAGGgCCaauuaaggggagaGGacAaCAAagGgaAGUgAaagGGCaauGG 81     
                               UGA+    :  U  +A+  G  :A+AAUUGGUAGGGCCAAUU   G:  G GGA A:    GG AA  +AAAGGGCAAU :
  gi_545778205_gb_U000 3777225 UGAACCAGAGGUCAGAUAAGCGAAGAAUUGGUAGGGCCAAUUCUUGUGGGGGGAGAUGUCUGGUAAAGAAAAGGGCAAUCC 3777145
                               ***************999988899*****************************9999999********************* PP

                                        v                   NC
                               <<.___>>>>>>>>>>>>>---->>::: CS
               RF02055      82 ca.uaAugCCauuGCCcuuGAuGucGgG 108    
                               :: U A::: AUUGCCCUU    U   G
  gi_545778205_gb_U000 3777144 UCaUCAGAGAAUUGCCCUUAGGUUGUUG 3777117
                               *955799********************* PP

RNAfold
>gi_545778205_gb_U000_317
AACAACCUAAGGGCAAUUCUCUGAUGAGGAUUGCCCUUUUCUUUACCAGA
CAUCUCCCCCCACAAGAAUUGGCCCUACCAAUUCUUCGCUUAUCUGACCU
CUGGUUCA
........(((((((((((((....)))))))))))))......((((((..((.........(((((((((.....))))))))).........))..))))))... (-39.60)

Length sequence

: 108

Length match:

107