gi_545778205_gb_U000_317 |
cmsearch-Rfam |
Family : STnc380 |
Id: RF02055 |
Type: Gene; sRNA; |
Taxonomy: Bacteria; | Ontology: Not found |
![](http://rfam.xfam.org/family/RF02055/image/cons) |
Description: not description |
Score: 36.4 |
E-value: 3.6e-05 |
From sequence: 3777225 |
To sequence: 3777117 |
Alignments: v v v v v v v NC :::::::<<-<<---------<<--<<<<<<<___>>>>>>>---->>----->>->>-----<<-----<<<<<<<<<<< CS RF02055 1 UGAguggGuagugGuAacugGccaaaauuGGuAGGgCCaauuaaggggagaGGacAaCAAagGgaAGUgAaagGGCaauGG 81 UGA+ : U +A+ G :A+AAUUGGUAGGGCCAAUU G: G GGA A: GG AA +AAAGGGCAAU : gi_545778205_gb_U000 3777225 UGAACCAGAGGUCAGAUAAGCGAAGAAUUGGUAGGGCCAAUUCUUGUGGGGGGAGAUGUCUGGUAAAGAAAAGGGCAAUCC 3777145 ***************999988899*****************************9999999********************* PP
v NC <<.___>>>>>>>>>>>>>---->>::: CS RF02055 82 ca.uaAugCCauuGCCcuuGAuGucGgG 108 :: U A::: AUUGCCCUU U G gi_545778205_gb_U000 3777144 UCaUCAGAGAAUUGCCCUUAGGUUGUUG 3777117 *955799********************* PP
|
RNAfold |
>gi_545778205_gb_U000_317 AACAACCUAAGGGCAAUUCUCUGAUGAGGAUUGCCCUUUUCUUUACCAGA CAUCUCCCCCCACAAGAAUUGGCCCUACCAAUUCUUCGCUUAUCUGACCU CUGGUUCA ........(((((((((((((....)))))))))))))......((((((..((.........(((((((((.....))))))))).........))..))))))... (-39.60) |
![](data:image/png;base64,R0lGODlhAQABAAD/ACwAAAAAAQABAAACADs=) |
Length sequence: 108 |
Length match: 107 |