gi_545778205_gb_U000_319

cmsearch-Rfam

Family :

STnc40

Id:

RF02057

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

32.1

E-value:

0.0018

From sequence:

854841

To sequence:

854778

Alignments:

                                                                                                 NC
                              :<<<-~~~~~--->>>-----------------------<<<<<<<<<<~~~~~>>>>>>>>>>:: CS
               RF02057      1 gcagU*[8]*cGucugaacUAAgaacUgAuuaaUaaAaaAAAAGGCGCA*[6]*UGCGCCUUUUUU 70    
                               C GU     CGUC GAA UAA+  + +A+  +UAAA  AAAAGGCG A     U CGCCUUUUUU
  gi_545778205_gb_U000 854841 CCGGU*[1]*CGUCUGAAUUAAUCUUCAAAACUUAAAGCAAAAGGCGGA*[7]*UCCGCCUUUUUU 854778
                              *****..8..689**********************************98..6..89********** PP

RNAfold
>gi_545778205_gb_U000_319
AUAAAAAAGGCGGAUUAUGAGUCCGCCUUUUGCUUUAAGUUUUGAAGAUU
AAUUCAGACGAACCGGCAU
.....(((((((((((...)))))))))))((((......((((((......))))))......)))). (-21.90)

Length sequence

: 69

Length match:

62