cmsearch-Rfam

Family :

Id:

Type:

Taxonomy:

Ontology:

Description:

Score:

E-value:

From sequence:

To sequence:

Alignments:

                                                                                                                 NC
                               :<<<<<<--<-<______>->-->>>>>>,,,,,,<<-<<---<<___________________>>-->>->>,,,,,,,, CS
               RF02060       1 AgGAuaaAucGuUCAAuAaggGauuaUCcCCGcuggcgAaaGcgcCAUUUUCGuCcAUcgccaCgcCUuUUguCUgCaGAA 81     
                               AGGAUAAAU:GUUCAAUAA+:GAUUAUCCCCGCUG:CGAAAGCGCCAUUUUCG+CCAUCG+CACGCCUUUUG:CUGCAGAA
  gi_545778205_gb_U000 3915284 AGGAUAAAUUGUUCAAUAACGGAUUAUCCCCGCUGACGAAAGCGCCAUUUUCGACCAUCGUCACGCCUUUUGUCUGCAGAA 3915364
                               ********************************************************************************* PP

                                                                                                             NC
                               ,,,,<<<_______>>>:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
               RF02060      82 AAuUagggcagUaCccuuAUUuAAGCgUuAGGUggAUGUUUUUGCUcUUuUUUuGAUCcAUGAAUAAAgagGaaAac 158    
                               AAUUA:GGCAGUACC:U AUUUAAGCGU+AGGUGGAUGUUUUUGCUCUU+UUU+GAUC+AUGAAUAAA AGGAAAAC
  gi_545778205_gb_U000 3915365 AAUUAAGGCAGUACCUUAAUUUAAGCGUCAGGUGGAUGUUUUUGCUCUUAUUUCGAUCAAUGAAUAAACAGGAAAAC 3915441
                               ***************************************************************************** PP

RNAfold

Length sequence

Length match: