cmsearch-Rfam

Family :

Id:

Type:

Taxonomy:

Ontology:

Description:

Score:

E-value:

From sequence:

To sequence:

Alignments:

                                              v              vv v                   v vv                         NC
                               ::::::::::::::<<<<<----<<<-<<<<<<<-----<<<~~~~~~>>>-->>>>>>>->>>----------------- CS
               RF02053       1 AaaAaaauuCAauauCcGuauAaUCcGAAAAuaaCacaaAcu*[12]*agUaAuuaUUUUAgGAUUAAGCUCAAUAUAaAa 87     
                               AAAA  A U AAU U :GUAU +UCCGAAA  A CA  +A:U      A:U   U  UUUAGGAUUAA CUCA   UA  A
  gi_545778205_gb_U000 4235709 AAAAGCAAUUAAUCUGCGUAUUUUCCGAAAUAAACAACGAUU*[ 3]*AAU--CUAUUUUAGGAUUAACCUCACGGUAUGA 4235634
                               ****************************99999888777554...4..333..35669*****************999887 PP

                                                v                                                           NC
                               -------------->>>>>,,,,,<<______>>,,,,,,.,,<<<<<<<<<____>>>>>>>>>::::::::::: CS
               RF02053      88 auuuaaGuaAaAacaCgGacAacCgGAaUuAUCuUAUAAA.AAaaGCCGauaUUAAuauCGGCuuUUuUauUauaU 162    
                               +UU   GU+AAA  AC: ACAA  GGA UUAUCU AUAAA AAA:GCCGA::U A ::UCGGC:UU UUAUUA+  
  gi_545778205_gb_U000 4235633 UUU-CCGUUAAAUUACAGACAAGGGGAUUUAUCUGAUAAAaAAAUGCCGACAUAA-CGUCGGCAUUGUUAUUAAGG 4235560
                               766.9********************************9761579********887.******************** PP

RNAfold

Length sequence

Length match: