cmsearch-Rfam

Family :

Id:

Type:

Taxonomy:

Ontology:

Description:

Score:

E-value:

From sequence:

To sequence:

Alignments:

                                                               v                                                 NC
                               ::::::::((((,,,~~~~~~~~~~~~,))))<<<<<<---.....-----------<<<<<<<<<<<___>>>>>>>>>> CS
               RF02082       1 UCAGAUCCaGgCAUA*[16]**[59]*AGcCuGaaaGaUGA.....CcCGUAUAACUaaaaaGGCCGCauUGCGGCCuuuu 139    
                               UCAGA CC:GGCA               GCC: AAAGA GA     C   U UAACUAAAAAGGCCGC+ UGCGGCCUUUU
  gi_545778205_gb_U000 1795311 UCAGACCCGGGCAG-*[14]**[15]*-GCCC-AAAGACGAguaauCUGAUCUAACUAAAAAGGCCGCUCUGCGGCCUUUU 1795217
                               ************96....9.....*...****.77899887333333445789**************************** PP

                                     v                                                          NC
                               >>>>>>>::::::::::::::::::::::::::.:::::::::::::::::::::::::::::: CS
               RF02082     140 uuCuuuCAAGUAaaggAUaCCCACCGUAAAAUC.ACGCUACCUCUUUUCAGCUGAAUGGAUAAC 202    
                               UUCUUU+ A U + G+A A  CACCGUAAAAUC ACGC A   C  UUCAGC GAA GGAUA C
  gi_545778205_gb_U000 1795216 UUCUUUUCACUGUCGAAGAGUCACCGUAAAAUCaACGCCAUGACACUUCAGCAGAACGGAUACC 1795153
                               *******************************98358**************************** PP

RNAfold

Length sequence

Length match: