gi_545778205_gb_U000_328

cmsearch-Rfam

Family :

STnc550

Id:

RF02081

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

396.9

E-value:

9.7e-105

From sequence:

1737843

To sequence:

1737453

Alignments:

                                                    v      v              v                               v      NC
                               ::::::::::::::{{{{{{,<<.___>>[[[[[.[,,,,,(((<<<<<<____>>>>>>,,,,,,,,,,,,,,,<<<<<_ CS
               RF02081       1 UAcAUuUCACUCCAGACCcuagc.UaAgcuCCUG.auAAacgccAGGuAAACGUUUgCCUuuACACACCCUaAuCgCaaca 79     
                               U CAUUUCACUCCAGACCCUA C U AG UCCUG A+AA+C:C AGGUAAACGUUUGCCUUUACACACC+UA  C CAACA
  gi_545778205_gb_U000 1737843 UCCAUUUCACUCCAGACCCUAACuUCAGCUCCUGcAAAAUCGCAAGGUAAACGUUUGCCUUUACACACCUUACGCACAACA 1737763
                               ***********************88*********99999****************************************** PP

                                        vv                                                 v   v    vvv     vvv  NC
                               _____>>>>>))),,,<<<___________>>>,,,,]]]]]],}}}}}},,,,,,,,,,(((((,,<<<<<_____>>>> CS
               RF02081      80 UcAGgguuGcggcACGCcGGaAAAACGACACgGAACGuCAGGaAggGGUCAAUGGCCGgUaCgCuAAuccagUaAGCcugg 160    
                                +AG+GUUG  G:ACGCCGGAAAAACGACACGGA CGUCAGGAAGGGGUCAAUGGCC GU C:C AAU:   UAAGC   :
  gi_545778205_gb_U000 1737762 AAAGUGUUGCGGUACGCCGGAAAAACGACACGGAGCGUCAGGAAGGGGUCAAUGGCCAGUACGCAAAUAGUGUAAGCGUGG 1737682
                               ********************************************************************************* PP

                                      v                 v   v   v                                         vv     NC
                               >,,,,,,<<<--<<_____>>-->>>,,,))))),,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,<<---- CS
               RF02081     161 aAUUUUGuCugAuCUUGAuGaAAaGgGGAaGcGuuAAAAACagUUAUCAauaUAAAacauGggAGAUUUUUGuacggaAaU 241    
                               AAUUUUG C:GAUCUUGA GAAA:G GGA G:G UAAAAACA UUAUCA UAUAAA+ A GGGAGAUUUUU +A+   A U
  gi_545778205_gb_U000 1737681 AAUUUUGGCCGAUCUUGACGAAAAGGGGAAGUGGUAAAAACACUUAUCAUUAUAAAUGACGGGAGAUUUUUUCAUCACAGU 1737601
                               ********************************************************************************* PP

                                                                                             vv                  NC
                               ----------------------<-<-<<<______>>>->-.>------------------->>::::::::::::::::: CS
               RF02081     242 gUGuAAAAAUGcGCaAuaUCACuUuUuguGUGGGAauaAaA.aGGAGAAAAcUUGAUGAguAccGAuCUgAAaUUUUCguU 321    
                               GUGUAAAAAUGCG AAUAUCACUUUUUGUGUGG AAUAAAA AGGAGAAAACUUGAUGAG+A  GA+CU AAAUUUUC++U
  gi_545778205_gb_U000 1737600 GUGUAAAAAUGCGUAAUAUCACUUUUUGUGUGGUAAUAAAAaAGGAGAAAACUUGAUGAGCACCGACCUUAAAUUUUCACU 1737520
                               **************************************99957************************************** PP

                                                                                                   NC
                               ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CS
               RF02081     322 gaUuACuACaaUuAUuGUuCUgGguuUGAUuGUuGCaGguGGuuUaACuGCuGcuCUGCACUGAUUU 388    
                               G+U AC+AC+AUUAU+GU CU GGUUUGAU+GU GC G  GGUUU+ACUGC+GC+CUGCACUGAUUU
  gi_545778205_gb_U000 1737519 GGUAACAACGAUUAUCGUCCUCGGUUUGAUCGUAGCCGUGGGUUUGACUGCCGCGCUGCACUGAUUU 1737453
                               ******************************************************************* PP

RNAfold
>gi_545778205_gb_U000_328
AAUCAGUGCAGCGCGGCAGUCAAACCCACGGCUACGAUCAAACCGAGGAC
GAUAAUCGUUGUUACCAGUGAAAAUUUAAGGUCGGUGCUCAUCAAGUUUU
CUCCUUUUUUAUUACCACACAAAAAGUGAUAUUACGCAUUUUUACACACU
GUGAUGAAAAAAUCUCCCGUCAUUUAUAAUGAUAAGUGUUUUUACCACUU
CCCCUUUUCGUCAAGAUCGGCCAAAAUUCCACGCUUACACUAUUUGCGUA
CUGGCCAUUGACCCCUUCCUGACGCUCCGUGUCGUUUUUCCGGCGUACCG
CAACACUUUUGUUGUGCGUAAGGUGUGUAAAGGCAAACGUUUACCUUGCG
AUUUUGCAGGAGCUGAAGUUAGGGUCUGGAGUGAAAUGGA
..(((((((((((.((.((((........)))).(((((.....((.(((((...))))).))..(((((.......((((.....(((.....))).....))))...............(((((((........)))))))...)))))(((((((((........((((((...))))))(((((.......)))))....))))))))).))))).........)).))))............)))))))(((((.((.((.((((((((((((.(((((......)))))...(((((((....)))))))((((((((((((........)))..)))))))))........)))))....)))))))...)).))..))))). (-91.60)

Length sequence

: 390

Length match:

389