gi_545778205_gb_U000_329

cmsearch-Rfam

Family :

STnc560

Id:

RF01407

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

Original sequence was AE014075.1/1805202-1804553. Based upon sequence conservation this was trimmed to AE014075.1/1805101-1804887.

Score:

280.4

E-value:

1.6e-65

From sequence:

1622948

To sequence:

1622735

Alignments:

                                                                                                                 NC
                               :::::::::::::::::<<<<<____>>>>>,,,,,,,<<<<<-<<<-<<<______>>>>>>->>>>>,,,,,,,,,,,, CS
               RF01407       1 caUUCAUUGAgAAAAcUGaugCUACuGuguCAACGAUcCGuuaUCagUGCagGAAAAuGCcuGuuagCGUAAAAGCAAAAC 81     
                               CAUUCAUUGAGAAAACUGAUGCUACUGUGUCAACGAU+CGUUAUCAGUGCAGGAAAAUGCCUGUUAGCGUAAAAGCAAAAC
  gi_545778205_gb_U000 1622948 CAUUCAUUGAGAAAACUGAUGCUACUGUGUCAACGAUUCGUUAUCAGUGCAGGAAAAUGCCUGUUAGCGUAAAAGCAAAAC 1622868
                               ********************************************************************************* PP

                                                                                                                 NC
                               ,,,,,,,,,,,,,,,,,,,,,,,,<<<<<<<<____>>>>>>>>---------------------<<-<<<<<<<<<<<<< CS
               RF01407      82 ACAAAUCUAUCCAUGCAAGCAUUcaCCGCcgGUuuACcgGCGGuUUUUUUUcgCcGUCAUAAAAAccAGGCCCCuuGuaCa 162    
                               ACAAAUCUAUCCAUGCAAGCAUUCACCGCC:GUUUAC:GGCGGUUUUUUUUCGCCGUCAUAAAAA:CAGGCCCCUUGUACA
  gi_545778205_gb_U000 1622867 ACAAAUCUAUCCAUGCAAGCAUUCACCGCCGGUUUACUGGCGGUUUUUUUUCGCCGUCAUAAAAAUCAGGCCCCUUGUACA 1622787
                               ********************************************************************************* PP

                                                                                    NC
                               ____>>>->>>>>>>>>>>>:::::::::::::::::::::::::::::::: CS
               RF01407     163 cAacuGuAaCaaGGGGCCggUUAgGUGAGGGAUUAUCUCCGUUCAUUAgUCA 214    
                               CAACUGUAACAAGGGGCCG:UUAGGUGAGGGAUUAUCUCCGUUCAUUAGUCA
  gi_545778205_gb_U000 1622786 CAACUGUAACAAGGGGCCGGUUAGGUGAGGGAUUAUCUCCGUUCAUUAGUCA 1622735
                               **************************************************** PP

RNAfold
>gi_545778205_gb_U000_329
GACUAAUGAACGGAGAUAAUCCCUCACCUAACCGGCCCCUUGUUACAGUU
GUGUACAAGGGGCCUGAUUUUUAUGACGGCGAAAAAAAACCGCCAGUAAA
CCGGCGGUGAAUGCUUGCAUGGAUAGAUUUGUGUUUUGCUUUUACGCUAA
CAGGCAUUUUCCUGCACUGAUAACGAAUCGUUGACACAGUAGCAUCAGUU
UUCUCAAUGAAUG
............((((.(((((.(((...(((.((((((((((.(((....))))))))))))).).))....))).)).........((((((........))))))..(((((((((.(((.((((.(.((((..((......)).)))).).)))))))))))(((.(((((...)))))...))).)))))..))).))))........ (-59.20)

Length sequence

: 213

Length match:

212