gi_545778205_gb_U000_330

cmsearch-Rfam

Family :

STnc630

Id:

RF02052

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

181.8

E-value:

6.7e-39

From sequence:

4332047

To sequence:

4332212

Alignments:

                                                                v                                 v              NC
                               :::::<_________>--------------[[,(((,<<<<<<<<<<<________>>>>>>>>>>><--<<_________ CS
               RF02052       1 auuuaaauCUUAAGGuUcgCUUAAUcUcuuacaggCAcaCUCUCCUCCAuauuuucGGAGGAGAGugucAUgAAAAacCGU 81     
                               AUU+AA+UCUUAAGGUUC+CUUAAUCUCU AC  GCA:ACUCUCCUCCA+ UU++CGGAGGAGAGU: +AUGAAAAACCGU
  gi_545778205_gb_U000 4332047 AUUGAACUCUUAAGGUUCACUUAAUCUCUGACGCGCAUACUCUCCUCCAGGUUAACGGAGGAGAGUGCAAUGAAAAACCGU 4332127
                               ********************************************************************************* PP

                                      v    v    v                                               v                NC
                               ___>>-->,,))),,,,<<<<------<<--<<<<<_____>>>>>----->>--------->>>>,,,,,]]:::::::: CS
               RF02052      82 AUUuAUGaAAGucUgACcacCgUGUucAgugUGCUGaUuGUCAGCAGcUUUcUuUAUgUcUGGgugAcuaCguAcUGAucu 162    
                                UUUAUG AAGU U+AC A:CGUGUUCAG+GUGCUG+U GUCAGCAGCUUUCUUUAU+UCUGG:U  C ACGUACUGAUCU
  gi_545778205_gb_U000 4332128 GUUUAUGAAAGUUUAACUACCGUGUUCAGCGUGCUGGUGGUCAGCAGCUUUCUUUAUAUCUGGUUUGCCACGUACUGAUCU 4332208
                               ********************************************************************************* PP

                                    NC
                               :::: CS
               RF02052     163 uUug 166    
                               UU++
  gi_545778205_gb_U000 4332209 UUCU 4332212
                               **** PP

RNAfold

>gi_545778205_gb_U000_330
UUGAACUCUUAAGGUUCACUUAAUCUCUGACGCGCAUACUCUCCUCCAGG
UUAACGGAGGAGAGUGCAAUGAAAAACCGUGUUUAUGAAAGUUUAACUAC
CGUGUUCAGCGUGCUGGUGGUCAGCAGCUUUCUUUAUAUCUGGUUUGCCA
CGUACUGAUCUUUCU
.((((((.....))))))....(((....(((....(((((((((((........)))))))))))...((..((((((.((.((.(((((((..(((((((.((.......)))))))))....)))))))..)).)).))))))..)))))...)))...... (-45.50)

Length sequence

: 165

Length match:

164