gi_545778205_gb_U000_331

cmsearch-Rfam

Family :

STnc70

Id:

RF02069

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

42.7

E-value:

5.3e-07

From sequence:

638707

To sequence:

638800

Alignments:

                                            v                  v                         v v   v    v          v  NC
                              :::::::::::.::<<<<<<--~~~~~~>>>>>>,,,,,,,,<<<____>>>,,,,,,,<<<--<<<<<<<<<<_.__>>>>> CS
               RF02069      1 GAGCGCAACAC.UUaGCCaGCA*[59]*CuGGCuCUGAAGUUaCCUACGGGuAGUUCAGGuaAUggGGCCgCCuG.UCaGGcG 134   
                               AG GCAACAC U  GCC:GCA      C:GGC CUGAAG UACC A GGGUAGUUCAG U A : GG C CCUG   AGG G
  gi_545778205_gb_U000 638707 AAGGGCAACACcUCAGCCUGCA*[ 2]*CAGGCACUGAAGAUACCAAAGGGUAGUUCAGAUUACACGGUCACCUGgAAAGGGG 638785
                              *********973669*****97...8..**********************************************72569**** PP

                                 v   v v      NC
                              >>>>>-->>>::::: CS
               RF02069    135 GCCuuUUuaCUUUAG 149   
                               CC :UU A UUU  
  gi_545778205_gb_U000 638786 GCCAUUUUACUUUUU 638800
                              *************** PP

RNAfold
>gi_545778205_gb_U000_331
UGUAAUCCAUGUCGUUGUUGCAUUUGUAAGGGCAACACCUCAGCCUGCAG
GCAGGCACUGAAGAUACCAAAGGGUAGUUCAGAUUACACGGUCACCUGGA
AAGGGGGCCAUUUUACUUUUUAUCGCCGCUGGCGGUGCAAAGUUCACAA
(((((((..(((.(((.((((....)))).))).))).....(((((....)))))..((((..((((....)))).))))))))))).((((.(((....))).)))).....(((((.(((((((...))))))).)))))...... (-47.20)

Length sequence

: 149

Length match:

92