gi_545778205_gb_U000_332

cmsearch-Rfam

Family :

StyR-44

Id:

RF01830

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria; Archaea;

Ontology:

Not found

Description:

not description

Score:

121.1

E-value:

7.9e-21

From sequence:

225643

To sequence:

225751

Alignments:

                                                                                                                  NC
                              :::::::::::::::::::<<-<<<<<<<----<<<-<<<<<<<____>>>>>>>>>>--------->>>>>>>>>----<<< CS
               RF01830      1 CUUUAAaAAUCUGGAuCAAGCUGaaaaUuGAAACgcugcAcagcuAAagcugUgcgcGAGUCUCUCAaAuuuuCGCAAcacga 83    
                              CUUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAAC:CUG:ACA:: AAA::UGU:CG:GAGUCUCUCAAAUUUUCGCAACACGA
  gi_545778205_gb_U000 225643 CUUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAACACUGAACAAUGAAAGUUGUUCGUGAGUCUCUCAAAUUUUCGCAACACGA 225725
                              *********************************************************************************** PP

                                                         NC
                              -<<<<____..______>>>>->>>: CS
               RF01830     84 aGauguaUc..AuGAAAcauCUucgG 107   
                              +GAUG AUC  A+GAAACAUCUUCGG
  gi_545778205_gb_U000 225726 UGAUGGAUCgcAAGAAACAUCUUCGG 225751
                              ************************** PP

>>

RNAfold
>gi_545778205_gb_U000_332
UUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAACACUGAACAAUGAAAGUU
GUUCGUGAGUCUCUCAAAUUUUCGCAACACGAUGAUGGAUCGCAAGAAAC
AUCUUCGG
..................((.(((((((((..(((.(((((((....))))))))))..)).....)))))))))....(((.((((..((....))..)))).))). (-24.60)

Length sequence

: 108

Length match:

107