gi_545778205_gb_U000_333

cmsearch-Rfam

Family :

StyR-44

Id:

RF01830

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria; Archaea;

Ontology:

Not found

Description:

not description

Score:

105.0

E-value:

1.5e-17

From sequence:

2729291

To sequence:

2729192

Alignments:

                                                                                                                 NC
                               :::::::::::::::::::<<-<<<<<<<----<<<-<<<<<<<____>>>>>>>>>>--------->>>>>>>>>----< CS
               RF01830       1 CUUUAAaAAUCUGGAuCAAGCUGaaaaUuGAAACgcugcAcagcuAAagcugUgcgcGAGUCUCUCAaAuuuuCGCAAcac 81     
                               CUUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAAC:CUG:ACA:: AAA::UGU:CG:GAGUCUCUCAAAUUUUCGCAAC+C
  gi_545778205_gb_U000 2729291 CUUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAACACUGAACAAUGAAAGUUGUUCGUGAGUCUCUCAAAUUUUCGCAACUC 2729211
                               ******************************************************************************986 PP

                                    vvv          vvv       NC
                               .<<-<<<<__________>>>>->>>: CS
               RF01830      82 .gaaGauguaUcAuGAAAcauCUucgG 107    
                                GAAG        UGAAACAUCUUCGG
  gi_545778205_gb_U000 2729210 uGAAG--------UGAAACAUCUUCGG 2729192
                               6****........9************* PP

RNAfold
>gi_545778205_gb_U000_333
AACCCGAAGAUGUUUCACUUCAGAGUUGCGAAAAUUUGAGAGACUCACGA
ACAACUUUCAUUGUUCAGUGUUUCAAUUUUCAGCUUGAUCCAGAUUUUUA
AAGAGCA
((((.((((........)))).).)))..(((((((.((((.(((...((((((......))))))))).))))))))))).((((................)))). (-20.50)

Length sequence

: 107

Length match:

98