gi_545778205_gb_U000_334

cmsearch-Rfam

Family :

StyR-44

Id:

RF01830

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria; Archaea;

Ontology:

Not found

Description:

not description

Score:

106.7

E-value:

6.8e-18

From sequence:

3426890

To sequence:

3426791

Alignments:

                                                                                                                 NC
                               :::::::::::::::::::<<-<<<<<<<----<<<-<<<<<<<____>>>>>>>>>>--------->>>>>>>>>----< CS
               RF01830       1 CUUUAAaAAUCUGGAuCAAGCUGaaaaUuGAAACgcugcAcagcuAAagcugUgcgcGAGUCUCUCAaAuuuuCGCAAcac 81     
                               CUUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAAC:CUG:ACA:C AAAG:UGU:CG:GAGUCUCUCAAAUUUUCGCAAC+C
  gi_545778205_gb_U000 3426890 CUUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAACACUGAACAACGAAAGUUGUUCGUGAGUCUCUCAAAUUUUCGCAACUC 3426810
                               ******************************************************************************986 PP

                                    vvv          vvv       NC
                               .<<-<<<<__________>>>>->>>: CS
               RF01830      82 .gaaGauguaUcAuGAAAcauCUucgG 107    
                                GAAG        UGAAACAUCUUCGG
  gi_545778205_gb_U000 3426809 uGAAG--------UGAAACAUCUUCGG 3426791
                               6****........9************* PP

>>

RNAfold
>gi_545778205_gb_U000_334
AACCCGAAGAUGUUUCACUUCAGAGUUGCGAAAAUUUGAGAGACUCACGA
ACAACUUUCGUUGUUCAGUGUUUCAAUUUUCAGCUUGAUCCAGAUUUUUA
AAGAGCA
((((.((((........)))).).)))..(((((((.((((.(((...(((((((....)))))))))).))))))))))).((((................)))). (-23.80)

Length sequence

: 107

Length match:

98