gi_545778205_gb_U000_336

cmsearch-Rfam

Family :

StyR-44

Id:

RF01830

Type:

Gene;

Taxonomy:

Eukaryota; Bacteria; Archaea;

Ontology:

Not found

Description:

not description

Score:

124.1

E-value:

1.9e-21

From sequence:

4037403

To sequence:

4037511

Alignments:

                                                                                                                 NC
                               :::::::::::::::::::<<-<<<<<<<----<<<-<<<<<<<____>>>>>>>>>>--------->>>>>>>>>----< CS
               RF01830       1 CUUUAAaAAUCUGGAuCAAGCUGaaaaUuGAAACgcugcAcagcuAAagcugUgcgcGAGUCUCUCAaAuuuuCGCAAcac 81     
                               CUUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAAC:CUG:ACA:C AAAG:UGU:CG:GAGUCUCUCAAAUUUUCGCAACAC
  gi_545778205_gb_U000 4037403 CUUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAACACUGAACAACGAAAGUUGUUCGUGAGUCUCUCAAAUUUUCGCAACAC 4037483
                               ********************************************************************************* PP

                                                            NC
                               <<-<<<<____..______>>>>->>>: CS
               RF01830      82 gaaGauguaUc..AuGAAAcauCUucgG 107    
                               GA+GAUG+AUC  A+GAAACAUCUUCGG
  gi_545778205_gb_U000 4037484 GAUGAUGAAUCgaAAGAAACAUCUUCGG 4037511
                               **************************** PP

>>

RNAfold
>gi_545778205_gb_U000_336
UUUAAAAAUCUGGAUCAAGCUGAAAAUUGAAACACUGAACAACGAAAGUU
GUUCGUGAGUCUCUCAAAUUUUCGCAACACGAUGAUGAAUCGAAAGAAAC
AUCUUCGG
..................((.(((((((((..(((.(((((((....))))))))))..)).....)))))))))....(((.((((..((....))..)))).))). (-24.80)

Length sequence

: 108

Length match:

107