gi_545778205_gb_U000_339

cmsearch-Rfam

Family :

SurA

Id:

RF02377

Type:

Gene; sRNA;

Taxonomy:

Bacteria;

Ontology:

Not found

Description:

not description

Score:

23.1

E-value:

0.00079

From sequence:

2900578

To sequence:

2900304

Alignments:

                                      v   vv                v                     v                         v    NC
                               ::::::{{{{{{{,[[,,,,<<<<<<<-<<<<<-<<<______>>>->>->>>->>>>>>>,,,,,,,,,,..,,,,(((( CS
               RF02377       1 CUUCAAGGgauGGAGCAAACGGCGGaGCaGgGaUaCuUUGGCCgGuUuCAuCuACuCCGCCUCUAAGUCCA..AAUcaaCa 79     
                                U  AA: GA:++A::AAA :G:::AG A+G:: :C: U  C :G: ::AU UACU:::C:      UC A  AAU  A:A
  gi_545778205_gb_U000 2900578 UUGUAAUAGACAAAAAAAAGAGAAAAGUAAGCC-GCCCUUUCAGGU-GGAU-UACUUUUCUCAGGUCUCUAguAAUUGAAA 2900501

                                                                                               v                 NC
                               (((,,,<<<<<<<~~~~~~>>>>>>>,<<-<<<<___.__>>>>->>,,,,,,,,,,,))))))),,,,,,,,,,,,,,,, CS
               RF02377      80 ggaUGUcgGucuC*[ 3]*GaggCugUaGCacGaAUU.UCuCguCCuCCUUGUUAAAUucuuGuuAAAUUCACAAUAUUAU 156    
                               ::AU  : ::C:        :G:: :    ::G A U  C C::C   CUU UUAAA U::U:U A A U   AAUAU A 
  gi_545778205_gb_U000 2900500 UAAUAAAUAACAU*[11]*GUGUUGUGUGAGAGUAAUcACGCUUCUG-CUUUUUAAAAUUAUUUGACAAUACGAAUAUCA- 2900417

                                                      v      v          v      v                   vv     v      NC
                               ,,,,,,,,,]],,<<<<<<<---<<<-<<<<__________>>>>->>>-->>>-->>->>,,,,,,,}}}}--}}}---- CS
               RF02377     157 AUACCAUUaGCCCGGGCgcuGUUCuuCucauUUuUGAAUUUaugaAaaGUAagcUGGCACCAaCUuccCCauUUcCCAuAu 237    
                                 AC  U A:: C    ::U   +UU :CA UU UG   UU UG: AA  AA::       A CU C+  :UU C : +  
  gi_545778205_gb_U000 2900416 -CACUGUGAUUAC----GAUCACAUUAGCAGUUAUGCCCUUAUGCUAA-AAAUU-------AUCUCCA--GUUACCAGAGA 2900351

                                                                            NC
                               -----<<<<<<<<<<--<<<__~~~~~>>>-->>>>>>>>>>:: CS
               RF02377     238 aaAAaaaaaacGCaCCUGCCCU*[2]*GGCCUGuGCguuuuuAu 278    
                                AA  A:AAA:G:A:CU:CCCU     GG:  :U:C:UUU:U U
  gi_545778205_gb_U000 2900350 UAAUGAGAAAGGUAACUUCCCU*[8]*GGAAGUUACCUUUCUUU 2900304

RNAfold

>gi_545778205_gb_U000_339
AAAAGAAAGGUAACUUCCCCCGCGAGAGGGAAGUUACCUUUCUCAUUAUC
UCUGGUAACUGGAGAUAAUUUUUAGCAUAAGGGCAUAACUGCUAAUGUGA
UCGUAAUCACAGUGUGAUAUUCGUAUUGUCAAAUAAUUUUAAAAAGCAGA
AGCGUGAUUACUCUCACACAACACCUCUGCUUUCCAUGUUAUUUAUUAUU
UCAAUUACUAGAGACCUGAGAAAAGUAAUCCACCUGAAAGGGCGGCUUAC
UUUUCUCUUUUUUUUGUCUAUUACAAAU
...((((((((((((((((.(....).)))))))))))))))).....((((((((((...((((((((...((((((.((((((....((....(((((..((((((((....(((((.......)))))..............((....))))))))))..)))))...))....))))))..))))))...))))))))..))))))))))...(((((((((((.((.(((....))).)).))))))))))).....(((((.....))))). (-92.60)

Length sequence

: 278

Length match:

273