Alignments: v vv v v v NC
::::::{{{{{{{,[[,,,,<<<<<<<-<<<<<-<<<______>>>->>->>>->>>>>>>,,,,,,,,,,..,,,,(((( CS
RF02377 1 CUUCAAGGgauGGAGCAAACGGCGGaGCaGgGaUaCuUUGGCCgGuUuCAuCuACuCCGCCUCUAAGUCCA..AAUcaaCa 79
U AA: GA:++A::AAA :G:::AG A+G:: :C: U C :G: ::AU UACU:::C: UC A AAU A:A
gi_545778205_gb_U000 2900578 UUGUAAUAGACAAAAAAAAGAGAAAAGUAAGCC-GCCCUUUCAGGU-GGAU-UACUUUUCUCAGGUCUCUAguAAUUGAAA 2900501
v NC
(((,,,<<<<<<<~~~~~~>>>>>>>,<<-<<<<___.__>>>>->>,,,,,,,,,,,))))))),,,,,,,,,,,,,,,, CS
RF02377 80 ggaUGUcgGucuC*[ 3]*GaggCugUaGCacGaAUU.UCuCguCCuCCUUGUUAAAUucuuGuuAAAUUCACAAUAUUAU 156
::AU : ::C: :G:: : ::G A U C C::C CUU UUAAA U::U:U A A U AAUAU A
gi_545778205_gb_U000 2900500 UAAUAAAUAACAU*[11]*GUGUUGUGUGAGAGUAAUcACGCUUCUG-CUUUUUAAAAUUAUUUGACAAUACGAAUAUCA- 2900417
v v v v vv v NC
,,,,,,,,,]],,<<<<<<<---<<<-<<<<__________>>>>->>>-->>>-->>->>,,,,,,,}}}}--}}}---- CS
RF02377 157 AUACCAUUaGCCCGGGCgcuGUUCuuCucauUUuUGAAUUUaugaAaaGUAagcUGGCACCAaCUuccCCauUUcCCAuAu 237
AC U A:: C ::U +UU :CA UU UG UU UG: AA AA:: A CU C+ :UU C : +
gi_545778205_gb_U000 2900416 -CACUGUGAUUAC----GAUCACAUUAGCAGUUAUGCCCUUAUGCUAA-AAAUU-------AUCUCCA--GUUACCAGAGA 2900351
NC
-----<<<<<<<<<<--<<<__~~~~~>>>-->>>>>>>>>>:: CS
RF02377 238 aaAAaaaaaacGCaCCUGCCCU*[2]*GGCCUGuGCguuuuuAu 278
AA A:AAA:G:A:CU:CCCU GG: :U:C:UUU:U U
gi_545778205_gb_U000 2900350 UAAUGAGAAAGGUAACUUCCCU*[8]*GGAAGUUACCUUUCUUU 2900304
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