gi_545778205_gb_U000_340

cmsearch-Rfam

Family :

sX4

Id:

RF02223

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

33.8

E-value:

3.9e-05

From sequence:

1097663

To sequence:

1097495

Alignments:

                                v   v       v           v        vvvv v                     v vvvv       v   v   NC
                               :((((((,,,,<<<<_________>>>><<---<<<<<<<-<<<<<_______>>>>>--->>>>>>>-->>,))))))-- CS
               RF02223       1 ACcGgGGACCAuCuGgAGaGGuggCaGagCggUugaacGcaCcuGaCucgAaauCagGcAggCguucauaGcgCCcCgGGG 81     
                               A CG: :A   U  GG GAGGUG C  AG:GG  GAA G  C:: :CU GAAA: ::G A  C      A:CG: :CG GG
  gi_545778205_gb_U000 1097663 AACGACAA---UUUGGUGAGGUGUCCGAGUGGCUGAAGGAGCACGCCUGGAAAGUGUGUAUACG---GCAACGUAUCGGGG 1097589
                               ***98665...777999*****************9**************************995...799***99****** PP

                                                  vvvv          vvvv                        NC
                               ---------((((((,,,,<<<<_____~~~~~>>>>~~~~~~,,,,,)))))).::::: CS
               RF02223      82 GuUCGaAUCCCCCCCUCUCCgCCAGAUU*[2]*GGcG*[36]*uCAUUGGGGGG.UGAGA 167    
                               GUUCGAAUCCCCCCCUC CCGCCA AUU                CA  GGGGGG UGAGA
  gi_545778205_gb_U000 1097588 GUUCGAAUCCCCCCCUCACCGCCAUAUU*[4]*----*[45]*ACACCGGGGGGaUGAGA 1097495
                               ******************9888877776..7.........7..7888888888768**** PP

>>

RNAfold
>gi_545778205_gb_U000_340
CUCAUCCCCCCGGUGUGUGCAAUAUACGAAAAAAAAGCCCGUACUUUCGU
ACGAGCUCUUCUUUAAAUAUGGCGGUGAGGGGGGGAUUCGAACCCCCGAU
ACGUUGCCGUAUACACACUUUCCAGGCGUGCUCCUUCAGCCACUCGGACA
CCUCACCAAAUUGUCGUU
...........((((.(((................(((.(((((....))))).))).........(((((((((((..(((((........)))))..)))..))))))))........(((.((.(.(((.....)))).)).))))))..))))........... (-45.90)

Length sequence

: 168

Length match:

167