gi_545778205_gb_U000_341

cmsearch-Rfam

Family :

sX4

Id:

RF02223

Type:

Gene; sRNA;

Taxonomy:

Eukaryota; Bacteria;

Ontology:

Not found

Description:

not description

Score:

25.5

E-value:

0.0046

From sequence:

2043575

To sequence:

2043387

Alignments:

                                v   v                           v     vv vv                     vv vv    v   v   NC
                               :((((((,,,,<<<<...._________>>>><<---<<<<<<<-<<<<<_______>>>>>--->>>>>>>-->>,)))) CS
               RF02223       1 ACcGgGGACCAuCuG....gAGaGGuggCaGagCggUugaacGcaCcuGaCucgAaauCagGcAggCguucauaGcgCCcC 77     
                                 :GG :ACCAUC G    GAGAG UG C GAG GG UG  C  ACC:G:CUCGAAA:C:GG+    G  CA   C : CC
  gi_545778205_gb_U000 2043575 CAUGGCAACCAUCUGaacgGAGAGAUGCCGGAGCGGCUGAACGGACCGGUCUCGAAAACCGGAGUAGGGGCAACUC-UACC 2043496
                               *************994333467888888***********************************9999999998877.99** PP

                                v              v                         v         NC
                               ))-----------((((((,,,,~~~~~~~~~~~~,,,,,))))))::::: CS
               RF02223      78 gGGGGuUCGaAUCCCCCCCUCUC*[15]**[36]*uCAUUGGGGGGUGAGA 167    
                               : GGGUUC AAUCCCC :CUCUC            U  UUG: GGGU AGA
  gi_545778205_gb_U000 2043495 GGGGGUUCAAAUCCCCCUCUCUC*[41]**[29]*UUCUUGAAGGGUUAGA 2043387
                               ***********************...9.....9..56699*********** PP

RNAfold
>gi_545778205_gb_U000_341
CUAACCCUUCAAGAAUAUUCUACGAUUGUUCUGUUUAGGAAAAGCAAGGC
GGGAAGUCGGGAGAUAAGUCAUUGAUAAAGUGGCGGAGAGAGGGGGAUUU
GAACCCCCGGUAGAGUUGCCCCUACUCCGGUUUUCGAGACCGGUCCGUUC
AGCCGCUCCGGCAUCUCUCCGUUCAGAUGGUUGCCAUG
.(((((..((..((((.((((.(((((.((((((((.(......).)))))))))))))))))....((((((.....))))))((((((((((((.......)))))(((((........)))))(((((((...)))))))........((((...)))).))))))))))).)).)))))..... (-60.70)

Length sequence

: 188

Length match:

187